View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_1 (Length: 743)
Name: NF7145_low_1
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 668; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 19 - 725
Target Start/End: Original strand, 41756207 - 41756914
Alignment:
| Q |
19 |
caagaaacgagaatcgaacacaagacatagactatgttccaacaggaccaatgtatcacaatcctaattcatttcacaggtaaatattgcataacannnn |
118 |
Q |
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| T |
41756207 |
caagaaacgagaatcgaacacaagacatagactatgttccaacaggaccaatgtatcacaatcctaattcatttcacaggtaaatattgcataacatttt |
41756306 |
T |
|
| Q |
119 |
nnnn-atatctaaaacattttactaacataattacatttgattggcttgatacgattcactcaccttacttcgccaaattgctatttgttatataacagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41756307 |
tttttatatctaaaacattttactaacataattacatttgattggcttgatacgattcactcaccttacttcgccaaattgttatttgttatataacagg |
41756406 |
T |
|
| Q |
218 |
agttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagtatatactccatgg |
317 |
Q |
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| T |
41756407 |
agttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagtatatactccatgg |
41756506 |
T |
|
| Q |
318 |
aaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756507 |
aaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagat |
41756606 |
T |
|
| Q |
418 |
ggtccaatttgtctatgtacgcgattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttgg |
517 |
Q |
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| T |
41756607 |
ggtccaatttgtctatgtacgcgattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttgg |
41756706 |
T |
|
| Q |
518 |
aaccgaagccttggagctgatcatttcatgctttcttgccatgattgggtatgtacatcactatctcttaaaaatcttagtccatgcattctctatttga |
617 |
Q |
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| T |
41756707 |
aaccgaagccttggagctgatcatttcatgctttcttgccatgattgggtatgtacatcactatctcttaaaaatcttagtccatgcattctctatttga |
41756806 |
T |
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| Q |
618 |
gaggaacaattacttactaaccaaagtttaccgtggtcgtgatcttcaatattgaggagaatagcgatcaaatgttgctcatataattgttaggatcagt |
717 |
Q |
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| T |
41756807 |
gaggaacaattacttactaaccaaagtttaccgtgttcgtgatcttcaatattgaggagaatagcgatcaaatgttgctcatataattgttaggatcagt |
41756906 |
T |
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| Q |
718 |
tgaatatt |
725 |
Q |
| |
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|||||||| |
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| T |
41756907 |
tgaatatt |
41756914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 206 - 568
Target Start/End: Original strand, 41764337 - 41764699
Alignment:
| Q |
206 |
ttatataacaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagta |
305 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| | || |
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| T |
41764337 |
ttatttaacaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagata |
41764436 |
T |
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| Q |
306 |
tatactccatggaaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttag |
405 |
Q |
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|||||||||||||||||| ||||||| || || |||||||||||| ||| ||||| |||||| |||||||||||||||||||||||| ||| ||| |
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| T |
41764437 |
tatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaaaagaccctgagaaggcacatgtatttttcctttcttatag |
41764536 |
T |
|
| Q |
406 |
tgtggcaaagatggtccaatttgtctatgtacgcgattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaa |
505 |
Q |
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||| |||| ||||||||| | |||||||||||| || |||| || || | | | |||||| |||| ||| ||| || |||||||| ||||||||||| |
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| T |
41764537 |
tgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtcctttccgaaaaa |
41764636 |
T |
|
| Q |
506 |
tatcccttttggaaccgaagccttggagctgatcatttcatgctttcttgccatgattgggta |
568 |
Q |
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| T |
41764637 |
tatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta |
41764699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 41764181 - 41764250
Alignment:
| Q |
35 |
aacacaagacatagactatgttccaacaggaccaatgtatcacaatcctaattcatttcacaggtaaata |
104 |
Q |
| |
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| T |
41764181 |
aacacaagacatagactatgttccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaata |
41764250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 8e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 213 - 567
Target Start/End: Complemental strand, 26974161 - 26973807
Alignment:
| Q |
213 |
acaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagtatatactc |
312 |
Q |
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||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
26974161 |
acaggagctacttagaaatggagaaacagttcaaagtattcgtctacgaagaaggggagcctccggtttttcacaatggaccttgcaaaagcatatactc |
26974062 |
T |
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| Q |
313 |
catggaaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggca |
412 |
Q |
| |
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||||||||| || ||||| ||||||||||| ||||||| | |||| |||| ||||| || |||| ||||| || | ||||||||| || ||||||| | |
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| T |
26974061 |
catggaagggaacttcattcatgctattgaattgaatgaccaatttagaactagagatcctcagaaagcacacgtctatttccttccgttcagtgtggta |
26973962 |
T |
|
| Q |
413 |
aagatggtccaatttgtctatgtacgcgattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatccct |
512 |
Q |
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| | |||||| ||| || ||| || | || |||| ||| ||| | || ||||| ||||| |||| |||||||||||||| || | | ||||||||| | |
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| T |
26973961 |
atgttggtccgattcgtttatttaagggactctcgtgactttggacctataagaaaaactgtcacggattatatcaatgtcattgctggaaaatatccat |
26973862 |
T |
|
| Q |
513 |
tttggaaccgaagccttggagctgatcatttcatgctttcttgccatgattgggt |
567 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
26973861 |
attggaatagaagccttggagctgatcatttcatgctagcttgccatgactgggt |
26973807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 26980250 - 26980205
Alignment:
| Q |
306 |
tatactccatggaaggaaatttcatccatgctattgagatgaatga |
351 |
Q |
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| T |
26980250 |
tatactccatggaaggaaacttcatccatgttattaagttgaatga |
26980205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 36806120 - 36806159
Alignment:
| Q |
529 |
tggagctgatcatttcatgctttcttgccatgattgggta |
568 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
36806120 |
tggagctgatcatttcatgctttcttgtcatgattgggta |
36806159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 568
Target Start/End: Complemental strand, 36515106 - 36515067
Alignment:
| Q |
529 |
tggagctgatcatttcatgctttcttgccatgattgggta |
568 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||| |
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| T |
36515106 |
tggagctgaccatttcatgctttcttgtcatgattgggta |
36515067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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