View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_10 (Length: 319)
Name: NF7145_low_10
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 55427609 - 55427908
Alignment:
| Q |
12 |
cgcccgcgccaggaatgctataggaacaaagattttaagtctgcacnnnnnnnnnnnnnnnnnnnncatcagtgatcatattctccaatatggtatattc |
111 |
Q |
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| T |
55427609 |
cgcccacgccaggaatgctataggaacaaagattttaagtctgcacaaaaagaaacaaaaacaaaacatcagtgatcatattctccaatatggtatattc |
55427708 |
T |
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| Q |
112 |
aaacgctgtccataattattgatgatcataccctaacaagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggc |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55427709 |
aaacgctgtccataatgattgatgatcataccctaacaagtaaatcctcaagtaaacagcagagtccaatccagcatggtcaataagctcaggttccggc |
55427808 |
T |
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| Q |
212 |
attctaagtgcagccggcatccaattcaaaaaccgaatatatgatctccaatctaaattgacaatctttcgcacgaacgctccaccgtgcacaggttctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
55427809 |
attctaagtgcagccggcatccaattcaaaaaccgaatatatgatctccaatctaaattgacaatctttcgcatgaacgctccaccgtgcacaggatctg |
55427908 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 37418500 - 37418404
Alignment:
| Q |
149 |
aagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaacc |
245 |
Q |
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||||| ||||||||||| ||| |||| ||||| || ||||| ||||| || || |||||||||||| | |||||| |||||||| ||||| |||| |
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| T |
37418500 |
aagtagatcctcaagtatacagcagaatccaagcctgcatgttcaattagttcgggttccggcatttgcaatgcagcaggcatccagttcaagaacc |
37418404 |
T |
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