View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_low_14 (Length: 274)

Name: NF7145_low_14
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_low_14
NF7145_low_14
[»] chr3 (13 HSPs)
chr3 (22-267)||(2806931-2807176)
chr3 (22-255)||(2790040-2790273)
chr3 (21-243)||(5412601-5412814)
chr3 (22-255)||(2748680-2748904)
chr3 (22-243)||(2797055-2797267)
chr3 (18-243)||(2758908-2759124)
chr3 (22-255)||(2856042-2856266)
chr3 (22-159)||(2768838-2768975)
chr3 (18-64)||(2838831-2838877)
chr3 (189-255)||(2838990-2839056)
chr3 (199-255)||(2768751-2768807)
chr3 (23-63)||(2818422-2818462)
chr3 (199-243)||(2755738-2755782)
[»] scaffold0691 (1 HSPs)
scaffold0691 (24-243)||(6386-6596)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 2807176 - 2806931
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2807176 tgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaa 2807077  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807076 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 2806977  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctttacacaggttct 267  Q
    |||||||| |||||||||||||||||||||||||||| || |||||    
T  2806976 cttcaatgcgaaatgatgcttcgcgcagctgctttacccaagttct 2806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 2790273 - 2790040
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||  || | |||||||| |   |||| ||||||||| |||||| | |||||||||    
T  2790273 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatcaaa 2790174  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||  ||||||||||||||| ||||| |||||  || |||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||||||||    
T  2790173 gttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 2790074  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||||||| ||||||||||||| | |||||||||    
T  2790073 cttcaatgcgaaatgatgcttctctcagctgctt 2790040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 5412814 - 5412601
Alignment:
Q  21 ttgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaa 120  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||  |||| |||||||||  | |||| ||||||||| |||||| | ||||||||    
T  5412814 ttgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaa 5412715  T
Q  121 agttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgata 220  Q
    |||||||| || ||||||||||||| ||| | |||||   | ||||||| |||||      ||  || ||||||| |||||||||||||| || |||| |    
T  5412714 agttttgatcaagcttgcaatcttgcagactaaagat---ctgcatccaagagga------ttgaccctatgcattagccgatggtattcgtcaatgaca 5412624  T
Q  221 tcttcaatgtgaaatgatgcttc 243  Q
    ||||||||| |||||||||||||    
T  5412623 tcttcaatgcgaaatgatgcttc 5412601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 2748904 - 2748680
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||  || |  ||||||||  | || | |||||||||||||||||| |||||||||    
T  2748904 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaa 2748805  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||   | ||||||||||||  || | |||||||   ||||| ||||||| |||      || ||||||| |||||| |||||||||| |||| ||    
T  2748804 gttttgatttgccttgcaatcttgccgactaaagatcc---gcatctaggaggattgg------ccctatgcattagccgaaggtattcatcaatgacat 2748714  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||||||| ||||||||||||| | |||||||||    
T  2748713 cttcaatgcgaaatgatgcttctctcagctgctt 2748680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 2797267 - 2797055
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||  || | ||||||||     |||| ||||||||| || ||| | | ||||||     
T  2797267 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatcaat 2797168  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||  || |||||||||||| ||| | |||||   |||||||| ||||||      |  ||| ||||||||||| || |||||||||| |||| ||    
T  2797167 gttttgattagacttgcaatcttgcagactaaagat---ccgcatcccggagga------taggccctatgcatcagctgaaggtattcatcaatgacat 2797077  T
Q  222 cttcaatgtgaaatgatgcttc 243  Q
    |||||||| |||||||||||||    
T  2797076 cttcaatgcgaaatgatgcttc 2797055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 2759124 - 2758908
Alignment:
Q  18 catttgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaat 117  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||  ||  | || ||| |||||| | ||||  ||||| || |  ||||| |||||    
T  2759124 catttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaat 2759025  T
Q  118 caaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatg 217  Q
    |||||||||||   |||||| |||||||| ||||  ||||   ||||  |||||||||      || ||| |||| ||||||||| ||||||| || ||     
T  2759024 caaagttttgattgggcttgtaatcttgttgaatacagat---ccgctaccaggagga------ttggccgtatggatcagccgaaggtattcgtcaatt 2758934  T
Q  218 atatcttcaatgtgaaatgatgcttc 243  Q
    |||||||||||| |||| ||||||||    
T  2758933 atatcttcaatgcgaaacgatgcttc 2758908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 2856042 - 2856266
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||  ||||||||||||||||| | ||  |||| ||| |||||  | ||||  ||||| || | |||| | |||||||||    
T  2856042 tgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaa 2856141  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||   |||||| || ||||| || | |||||||||    |||| ||||| |||      || |||| |||| |||| |||||||||| |||| ||    
T  2856142 gttttgattcggcttgtaaccttgttgactaaagatccacg---tccatgaggattgg------ccctatgtatcaaccgaaggtattcatcaatgacat 2856232  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||||||| ||||||||||||| | |||||||||    
T  2856233 cttcaatgcgaaatgatgcttctctcagctgctt 2856266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 2768975 - 2768838
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    |||| |||| ||| |||||||||| ||||||||||||||||| | ||  |||| |||||||||  | ||||   |||| || | |||||| ||| |||||    
T  2768975 tgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaatgcaattttatgacggggagtcaaa 2768876  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatcc 159  Q
    |||||||  ||||||||||||||| ||| | |||||||    
T  2768875 gttttgattaggcttgcaatcttgaagattaaagatcc 2768838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 2838831 - 2838877
Alignment:
Q  18 catttgaaatttgtaagttatacctctcacttctttccttgattccg 64  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  2838831 catttgaaatttgaaagttatacctctcgcttcttttcttgattccg 2838877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 2838990 - 2839056
Alignment:
Q  189 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    ||||||| || ||| |||||||||| |||| |||||||||| ||||||||||||| | |||||||||    
T  2838990 tatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2839056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 2768807 - 2768751
Alignment:
Q  199 ccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||| | |||||||||    
T  2768807 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 2818462 - 2818422
Alignment:
Q  23 gaaatttgtaagttatacctctcacttctttccttgattcc 63  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  2818462 gaaatttggaagttatacctctcgcttctttccttgattcc 2818422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 2755782 - 2755738
Alignment:
Q  199 ccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttc 243  Q
    |||| |||||||||| |||| |||||||||| |||||||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 6386 - 6596
Alignment:
Q  24 aaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagt 123  Q
    ||||||| ||||||||||| |||||||| ||||||||||| | ||  |||| ||| |||||  | |||| ||||||||| |||||  ||| |||||||||    
T  6386 aaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagt 6485  T
Q  124 tttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatct 223  Q
    |||||  |||||| |||||||| ||| | | |||   ||||||||||||||       || ||| |||| ||||||||| |||||||||| || | ||||    
T  6486 tttgattaggcttacaatcttgcagactaatgat---ccgcatccaggagg------gttggccctatggatcagccgaaggtattcatcaataacatct 6576  T
Q  224 tcaatgtgaaatgatgcttc 243  Q
    |||||| |||||||||||||    
T  6577 tcaatgcgaaatgatgcttc 6596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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