View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_low_16 (Length: 258)

Name: NF7145_low_16
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_low_16
NF7145_low_16
[»] chr5 (16 HSPs)
chr5 (1-241)||(30241884-30242124)
chr5 (10-241)||(29853668-29853905)
chr5 (5-241)||(29872531-29872773)
chr5 (21-241)||(30436173-30436399)
chr5 (21-241)||(30712948-30713174)
chr5 (1-241)||(30400431-30400677)
chr5 (12-241)||(30338039-30338274)
chr5 (12-241)||(30483758-30483993)
chr5 (36-241)||(30750000-30750211)
chr5 (8-241)||(30206879-30207118)
chr5 (36-241)||(30060726-30060937)
chr5 (12-171)||(30676802-30676961)
chr5 (26-241)||(30521153-30521374)
chr5 (26-241)||(30561493-30561714)
chr5 (67-146)||(30475833-30475912)
chr5 (26-92)||(17983410-17983476)
[»] chr7 (1 HSPs)
chr7 (2-241)||(26707689-26707934)
[»] chr4 (2 HSPs)
chr4 (2-241)||(20296086-20296331)
chr4 (67-239)||(52352318-52352496)
[»] chr1 (2 HSPs)
chr1 (1-241)||(7581222-7581468)
chr1 (1-241)||(7099778-7100024)
[»] chr3 (1 HSPs)
chr3 (65-143)||(25293491-25293569)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30241884 - 30242124
Alignment:
Q  1 ggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30241884 ggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcgaaagcattgggaggtt 30241983  T
Q  101 taatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaaattttgcctgctttgaggctgagtta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30241984 taatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaaattttgcctgctttgaggttgagtta 30242083  T
Q  201 cttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  30242084 cttttatttaacaccaactctaaaacaatgtttctcttttt 30242124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 29853905 - 29853668
Alignment:
Q  10 agagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagct 109  Q
    |||||||||  ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||    
T  29853905 agagaagagcatacaaagcttgtggaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcaaaaacattgggaggtttgatgagct 29853806  T
Q  110 caaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttactt 203  Q
    |||||||||||||| ||||||||||||| |||||||| || ||||||||||| || |||||||||      ||||||| |||||||||| ||||||||||    
T  29853805 caaggaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcttgctttgaggttgagttactt 29853706  T
Q  204 ttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29853705 ttatttaacaccaaccctaaaacaatgtttctcctttt 29853668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 29872773 - 29872531
Alignment:
Q  5 attatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaat 104  Q
    |||| |||||||||  |||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||    
T  29872773 attacagagaagagcatacaaagcttatggaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtttgat 29872674  T
Q  105 gagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagt 198  Q
    ||||||||||||||||||| ||||||||||||| ||||| || || ||||||||||| ||  | ||||||      ||||||| |||||||||| |||||    
T  29872673 gagctcaaggaatgaagaaaaggaatggcttgatattaaggacagtgagctttgggctttatcgcaagaaaattctattttgcttgctttgaggttgagt 29872574  T
Q  199 tacttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  29872573 tacttttatttaacaccaaccctaaagcaatgtttctcttttt 29872531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 30436399 - 30436173
Alignment:
Q  21 tacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaa 120  Q
    ||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  30436399 tacaaagtttgtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaa 30436300  T
Q  121 gaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttacttttatttaacac 214  Q
    ||| ||||||||||||| |||||||| || ||||||||||| || |||||||||      |||||||| ||||||||  |||||||||||||||||||||    
T  30436299 gaaaaggaatggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcccgctttgagattgagttacttttatttaacac 30436200  T
Q  215 caaccctaaaacaatgtttctcttttt 241  Q
    |||||||||| ||||||||||||||||    
T  30436199 caaccctaaagcaatgtttctcttttt 30436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 30712948 - 30713174
Alignment:
Q  21 tacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaa 120  Q
    ||||||| ||||| |||||||||||||||| | ||||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||    
T  30712948 tacaaagtttgtggaaataggaaaggagatagcaaagaaatgtaatggattgccacttgcagcaaaagcattggggggtttgatgagctcaaggaatgaa 30713047  T
Q  121 gaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttacttttatttaacac 214  Q
    ||| | ||||||||||| |||||||| || ||||||||||| || |||||||||      |||||||||||||||||||||||||||||||||||| |||    
T  30713048 gaaaatgaatggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcctgctttgaggctgagttacttttatttatcac 30713147  T
Q  215 caaccctaaaacaatgtttctcttttt 241  Q
    |||||||||| ||||||||||||||||    
T  30713148 caaccctaaagcaatgtttctcttttt 30713174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30400677 - 30400431
Alignment:
Q  1 ggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtt 100  Q
    |||||||||||||||||| || || | |||||   ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  30400677 ggacattatagagaagagcgtgcagaacttgtagcaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtt 30400578  T
Q  101 taatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggct 194  Q
    | |||||||||||||||| |||| ||||||||||||| |||||||| |  ||||||||||| || ||| |||||      ||||||| | |||||||| |    
T  30400577 tgatgagctcaaggaatggagaaaaggaatggcttgatattaaagacactgagctttgggctttaccagaagaaaattatattttgcgttctttgaggtt 30400478  T
Q  195 gagttacttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  30400477 gagttacttttatttaacaccgaccctaaagcaatgtttctcttttt 30400431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 30338039 - 30338274
Alignment:
Q  12 agaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctca 111  Q
    |||||||  ||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||  ||||    
T  30338039 agaagaggatacaaagcttgtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctca 30338138  T
Q  112 aggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttactttt 205  Q
    | |||||||||| ||||||||||||| |||||||| || ||||||||||  || ||||| |||      ||||| |||||||||||  ||||||||||||    
T  30338139 atgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttaccacatgaaaaatctattttacctgctttgagtttgagttactttt 30338238  T
Q  206 atttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||||||||||||||||||| ||||||||||| ||||    
T  30338239 atttaacaccaaccctaaagcaatgtttctcctttt 30338274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 30483993 - 30483758
Alignment:
Q  12 agaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctca 111  Q
    |||||||  ||||||||||||| | || ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||  ||||    
T  30483993 agaagagcatacaaagcttgtggagattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctca 30483894  T
Q  112 aggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttactttt 205  Q
    | |||||||||| ||||||||||||| |||||||| || ||||||||||  || ||||| |||      ||||| |||||||||||| ||||||||||||    
T  30483893 atgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttaccacatgaaaaatctattttacctgctttgaggttgagttactttt 30483794  T
Q  206 atttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||||||||||||||||||| ||||||||||| ||||    
T  30483793 atttaacaccaaccctaaagcaatgtttctcctttt 30483758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 30750211 - 30750000
Alignment:
Q  36 aataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggctt 135  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||||||||| || ||| |||||||||||    
T  30750211 aataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt 30750112  T
Q  136 gaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttacttttatttaacaccaaccctaaaacaat 229  Q
     ||||||||||||| || |||||||  ||  || | |||      |||||||||||||||||| ||||||||||||||||| |  || ||||||||||||    
T  30750111 aaaattaaagatagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat 30750012  T
Q  230 gtttctcttttt 241  Q
    ||||||||||||    
T  30750011 gtttctcttttt 30750000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 30207118 - 30206879
Alignment:
Q  8 atagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgag 107  Q
    ||||||||||| || || |||||||| |||||||||||||||| |||||||||||  |||||||||||||||||||  |||||||||||||| |||||||    
T  30207118 atagagaagagcgtgcagagcttgtggaaataggaaaggagatagtaaagaaatgtgatggattgcctcttgcagcacaagcattgggaggtctaatgag 30207019  T
Q  108 ctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccaca--agaa----attttgcctgctttgaggctgagttac 201  Q
     ||||||||||||||| | |||||||||||||||||||| || || |||||||| || |||||  ||||    ||||| |||||||||||| |||| |||    
T  30207018 ttcaaggaatgaagaaaaagaatggcttgaaattaaagagagtgaactttgggctttaccacatgagaattatattttacctgctttgaggttgagctac 30206919  T
Q  202 ttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||| ||||||| |||||| |||| |  |||||| ||||||    
T  30206918 tttcatttaactccaaccttaaagcggtgtttcgcttttt 30206879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 30060937 - 30060726
Alignment:
Q  36 aataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggctt 135  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||| || ||| |||||||||||    
T  30060937 aataggaaaggagatagtaaagaaatgcaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt 30060838  T
Q  136 gaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctgagttacttttatttaacaccaaccctaaaacaat 229  Q
     |||||||||| || || |||||||  ||  || | |||      |||||||||||||||||| ||||||||||||||||| |  || ||||||||||||    
T  30060837 aaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat 30060738  T
Q  230 gtttctcttttt 241  Q
    ||||||||||||    
T  30060737 gtttctcttttt 30060726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 30676802 - 30676961
Alignment:
Q  12 agaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctca 111  Q
    |||||||  ||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  30676802 agaagaggatacaaagcttgtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctca 30676901  T
Q  112 aggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaa 171  Q
    |||||||||||  ||||||||||||| |||||||| || ||||||||||| || ||||||    
T  30676902 aggaatgaagagaaggaatggcttgatattaaagacagtgagctttgggctttaccacaa 30676961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 30521153 - 30521374
Alignment:
Q  26 agcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaaga 125  Q
    ||||||| | ||||||||| ||||| |||||||| ||    |||||||||||||||||  |||||||||||||  ||||| ||||||||| || |||| |    
T  30521153 agcttgtcacaataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaa 30521252  T
Q  126 ggaatggcttgaaattaaagatagcgagctttgggccttgcc--acaagaa----attttgcctgctttgaggctgagttacttttatttaacaccaacc 219  Q
     ||||||||||||||||||||||||  | ||||| | || ||  |  ||||    |||||||||||||| ||| |||| |||||| ||||||  ||||||    
T  30521253 agaatggcttgaaattaaagatagcaggatttggtctttaccgaatgagaattctattttgcctgctttaaggttgagctactttcatttaaacccaacc 30521352  T
Q  220 ctaaaacaatgtttctcttttt 241  Q
     |||||||||||||| ||||||    
T  30521353 ttaaaacaatgtttcacttttt 30521374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 30561493 - 30561714
Alignment:
Q  26 agcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaaga 125  Q
    ||||||| | ||||||||| ||||| |||||||| ||    |||||||||||||||||  |||||||||||||  ||||| ||||||||| || |||| |    
T  30561493 agcttgtcacaataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaa 30561592  T
Q  126 ggaatggcttgaaattaaagatagcgagctttgggccttgcc--acaagaa----attttgcctgctttgaggctgagttacttttatttaacaccaacc 219  Q
     ||||||||||||||||||||||||  | ||||| | || ||  |  ||||    |||||||||||||| ||| |||| |||||| ||||||  ||||||    
T  30561593 agaatggcttgaaattaaagatagcaggatttggtctttaccgaatgagaattctattttgcctgctttaaggttgagctactttcatttaaacccaacc 30561692  T
Q  220 ctaaaacaatgtttctcttttt 241  Q
     |||||||||||||| ||||||    
T  30561693 ttaaaacaatgtttcacttttt 30561714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 30475912 - 30475833
Alignment:
Q  67 ggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggcttgaaattaaaga 146  Q
    |||||||||||||||||  |||||||||||||| ||||| ||||||||| ||| ||| | ||||||||||||||||||||    
T  30475912 ggattgcctcttgcagcacaagcattgggaggtctaatgcgctcaaggagtgatgaaaatgaatggcttgaaattaaaga 30475833  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 17983476 - 17983410
Alignment:
Q  26 agcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcatt 92  Q
    |||||||||||||||| |||||||| ||||| || ||    ||||||||||||||||| ||||||||    
T  17983476 agcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcaaaagcatt 17983410  T

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Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 26707934 - 26707689
Alignment:
Q  2 gacattatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggttt 101  Q
    ||||||| |||||||||  ||||||||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  26707934 gacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaaaaaatgtaatggattacctcttgcagcaaaagcattgggaggttt 26707835  T
Q  102 aatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctg 195  Q
    ||||  ||||| |||||||||| ||||||||||||| |||||||| || ||||||||||  || |||||||||      |||||||||||||||||| ||    
T  26707834 aatgttctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttaccacaagaaaaatctattttgcctgctttgaggttg 26707735  T
Q  196 agttacttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  26707734 agttacttttatttaacaccaaccctaaagcaatgtttctcttttt 26707689  T

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Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 20296086 - 20296331
Alignment:
Q  2 gacattatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggttt 101  Q
    ||||||| |||||||||  ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20296086 gacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggttt 20296185  T
Q  102 aatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaa------attttgcctgctttgaggctg 195  Q
    ||||  ||||| |||||||||| ||||||||| ||| |||||||| |  || |||||||| || |||||||||      |||||||||||||||||||||    
T  20296186 aatggtctcaatgaatgaagaaaaggaatggcgtgatattaaagacaatgacctttgggctttaccacaagaaaaatctattttgcctgctttgaggctg 20296285  T
Q  196 agttacttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  20296286 agttacttttatttaacaccaactctaaagcaatgtttctcttttt 20296331  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 52352496 - 52352318
Alignment:
Q  67 ggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgc 166  Q
    |||||||||||||| ||  ||||||| |||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||| ||| |||||||| | ||      
T  52352496 ggattgcctcttgctgcacaagcattaggaggtctaatgcgctcaagaaatggagaaaaggaatgggttgaaattaaagagagcaagctttggtctttat 52352397  T
Q  167 caca--agaa----attttgcctgctttgaggctgagttacttttatttaacaccaaccctaaaacaatgtttctcttt 239  Q
    || |  ||||    ||||||||||| |||||| ||||||| ||  |||||||  ||||| |||||||||||||||||||    
T  52352396 cagatgagaattctattttgcctgccttgaggttgagttatttccatttaacgtcaaccttaaaacaatgtttctcttt 52352318  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7581222 - 7581468
Alignment:
Q  1 ggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtt 100  Q
    |||||| |||||||||||||| || ||||||||  |||||| |||||||| ||||| |||||    |||||||||||||||||  ||||||||||  ||     
T  7581222 ggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtaaaaaaatgtgcgggattgcctcttgcagcacaagcattggggtgtc 7581321  T
Q  101 taatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccaca--agaa----attttgcctgctttgaggct 194  Q
    |||||  |||||||| ||||||| |||||||| ||||||||||||| |||||||||||||  || || ||  ||||    | |||||| ||| ||||  |    
T  7581322 taatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattctactttgccagctctgagatt 7581421  T
Q  195 gagttacttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||| |||||| ||||| |||||||| |||||||||||||| ||||||    
T  7581422 gagctactttcatttatcaccaaccttaaaacaatgtttcgcttttt 7581468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7100024 - 7099778
Alignment:
Q  1 ggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagatcgtaaagaaatgcaatggattgcctcttgcagcgaaagcattgggaggtt 100  Q
    |||||||| ||||||||| || |  |||||||||||||||| |||||||| ||||| || ||    |||||||||||||||||  ||||||| ||  ||     
T  7100024 ggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcacaagcattagggtgtc 7099925  T
Q  101 taatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccaca--agaa----attttgcctgctttgaggct 194  Q
    |||||   ||||| | ||||||| | | |||| | ||||||||||| || ||| | ||||| || || ||  ||||    |||||||| ||||||||| |    
T  7099924 taatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttaccgcacgagaattctattttgccagctttgaggtt 7099825  T
Q  195 gagttacttttatttaacaccaaccctaaaacaatgtttctcttttt 241  Q
    ||| |||||  ||||| |||||||| |||||||||||||| ||||||    
T  7099824 gagctacttccatttatcaccaaccttaaaacaatgtttcgcttttt 7099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 25293491 - 25293569
Alignment:
Q  65 atggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggcttgaaattaa 143  Q
    ||||| |||||||||||||  ||| ||| |||||| ||||| ||||||||| || |||| | || ||||||||||||||    
T  25293491 atggactgcctcttgcagcacaagtatttggaggtctaatgcgctcaaggagtggagaaaaagagtggcttgaaattaa 25293569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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