View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_low_2 (Length: 696)

Name: NF7145_low_2
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_low_2
NF7145_low_2
[»] chr7 (4 HSPs)
chr7 (19-344)||(32059253-32059580)
chr7 (475-689)||(32060911-32061125)
chr7 (324-391)||(32059188-32059255)
chr7 (357-538)||(16331492-16331673)
[»] chr3 (2 HSPs)
chr3 (357-669)||(3237119-3237424)
chr3 (281-313)||(3300423-3300455)
[»] chr8 (5 HSPs)
chr8 (434-565)||(11109057-11109188)
chr8 (438-565)||(11595219-11595346)
chr8 (580-668)||(39530810-39530898)
chr8 (67-186)||(39532697-39532814)
chr8 (444-533)||(39530925-39531014)
[»] chr4 (1 HSPs)
chr4 (405-565)||(37590200-37590360)
[»] chr6 (2 HSPs)
chr6 (396-539)||(33097813-33097956)
chr6 (18-131)||(29206514-29206627)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 32059580 - 32059253
Alignment:
Q  19 actttcaacctccaaatcccaccccaa-tacccatgccttcttaagtgagagttatccacaatttcttttacacacaaacgatatgcacttcttaccgaa 117  Q
    |||||||||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32059580 actttcaacctccaaattacactccaaatacccatgccttcttaagtgagagttatccacaatttcttttactcacaaacgatatgcacttcttaccgaa 32059481  T
Q  118 taatatccattcttt-catgattccagtacaccaatctatcctcattcacttgcgggtacagcggtatatctaaaattctttgcgctgttccttctacaa 216  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32059480 taatatccattcttttcaggattccagtacaccaatttatcctcattcacttgtgggtacagcggtatatctaaaattctttgcgctgttccttctacaa 32059381  T
Q  217 aaatatgccacacaagctatttgttccatgtttttgtgtcttagtgaatcaagtgacccacaaaatatctttgtaaagccaaagctgccggactcacggg 316  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059380 aaatatgccgcacaagctctttgttccatgtttttgtgtcttagtgaatcaagtgacccacaaaatatctttgtaaagccaaagctgccggactcacggg 32059281  T
Q  317 aggtgtactagagctagcacccaaccaa 344  Q
    ||| ||||||||||||||||||||||||    
T  32059280 aggcgtactagagctagcacccaaccaa 32059253  T

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Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 475 - 689
Target Start/End: Original strand, 32060911 - 32061125
Alignment:
Q  475 aattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttcagtttgaagcttccatccttgtttcccaagcatgcatagtta 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32060911 aattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttcagtttgaagcttccatccttgtttcccaagcatgcacagtta 32061010  T
Q  575 aatcattaaatcccgcaagatccttaaatcccattccaccatgccttttgtgaaccgatggtttgtctcacaacaaccaatgcattcctctattattact 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061011 aatcattaaatcccgcaagatccttaaatcccattccaccatgccttttgtgaaccgatggtttgtctcacaacaaccaatgcattcctctattattact 32061110  T
Q  675 tattagcaccaccat 689  Q
    |||||||||||||||    
T  32061111 tattagcaccaccat 32061125  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 32059188 - 32059255
Alignment:
Q  324 ctagagctagcacccaaccaaggctctcctatcataggaatattaaatccggatcctactatctattg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059188 ctagagctagcacccaaccaaggctctcctatcataggaatattaaatccggatcctactatctattg 32059255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 357 - 538
Target Start/End: Complemental strand, 16331673 - 16331492
Alignment:
Q  357 ataggaatattaaatccggatcctactatctattgcgcgccatgactaacaaccaattttgagctaaaaatattccaccaaacaaatctaggattatgtc 456  Q
    |||||||||| | | || ||||||||  || || |||| ||||| || ||||||| ||||| |||||||||  ||| ||||||||| |||||||||||||    
T  16331673 ataggaatatcataacctgatcctaccttccatcgcgctccatgcctcacaaccagttttgcgctaaaaatgctccgccaaacaaaactaggattatgtc 16331574  T
Q  457 ctaactttaaaccaaggtaattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttcagtttg 538  Q
    |||| ||| | |  || ||||||| ||||||| ||||||||||  | || ||||| | ||||| ||| | ||||||||||||    
T  16331573 ctaattttgacctgagataattaccatgaggaaaataccttgcactgaaaaccttggaaactaaagtgttcggttcagtttg 16331492  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 357 - 669
Target Start/End: Complemental strand, 3237424 - 3237119
Alignment:
Q  357 ataggaatattaaatccggatcctactatctattgcgcgccatgactaacaaccaattttgagctaaaaatattccaccaaacaaatctaggattatgtc 456  Q
    |||||||||| | | || ||||||||  || || |||| ||||| || ||||||| ||||| |||||||||  ||| ||||||||| |||||||| ||||    
T  3237424 ataggaatatcataacctgatcctaccttccatcgcgctccatgcctcacaaccagttttgcgctaaaaatgctccgccaaacaaaactaggattgtgtc 3237325  T
Q  457 ctaactttaaaccaaggtaattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttcagtttgaagcttccatccttgttt 556  Q
    |||| ||  | || || ||||||| ||||||||||||||||||||| || ||||| | ||||| ||| || ||||||||||| |  ||||| ||||| ||    
T  3237324 ctaatttggacccgagataattaccatgaggataataccttgccttgaaaaccttggaaactaaagtgtctggttcagtttggaatttccacccttgctt 3237225  T
Q  557 cccaagcatgcatagttaaatcattaaatcccgcaagatccttaaatcccattccaccatgccttttgtgaaccgatggtttgtctcacaacaaccaatg 656  Q
     || |||||   ||       |||||||  |||||||||| || |||||||||||||||||||| |||||||||||   ||| || |||  |||||||||    
T  3237224 tccgagcattgcta-------cattaaacgccgcaagatctttgaatcccattccaccatgcctcttgtgaaccgacaatttatcccacgccaaccaatg 3237132  T
Q  657 cattcctctatta 669  Q
     |||||| |||||    
T  3237131 aattcctttatta 3237119  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 3300423 - 3300455
Alignment:
Q  281 atatctttgtaaagccaaagctgccggactcac 313  Q
    ||||||||||||||| |||||||||||||||||    
T  3300423 atatctttgtaaagctaaagctgccggactcac 3300455  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 434 - 565
Target Start/End: Original strand, 11109057 - 11109188
Alignment:
Q  434 ccaaacaaatctaggattatgtcctaactttaaaccaaggtaattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttca 533  Q
    ||||||||| |||||||||||||| || ||| | |||||  |||||||  ||||  ||||||||||||| |||||||||||||||| ||||||  ||| |    
T  11109057 ccaaacaaaactaggattatgtcccaattttgacccaagaaaattacttcgagggaaataccttgccttgaacaccttagcaactaaagtatcaagttaa 11109156  T
Q  534 gtttgaagcttccatccttgtttcccaagcat 565  Q
    ||||| ||||||||||||||||| ||||||||    
T  11109157 gtttggagcttccatccttgttttccaagcat 11109188  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 565
Target Start/End: Original strand, 11595219 - 11595346
Alignment:
Q  438 acaaatctaggattatgtcctaactttaaaccaaggtaattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttcagttt 537  Q
    ||||| |||||||||||||| || ||| | |||||  |||||||| ||||  |||| |||||||| ||||||||||||| || |||||| ||||||||||    
T  11595219 acaaaactaggattatgtcccaattttgacccaagaaaattactacgaggggaatagcttgccttgaacaccttagcaaataaagtatcaggttcagttt 11595318  T
Q  538 gaagcttccatccttgtttcccaagcat 565  Q
    | ||||||||||||||||| ||||||||    
T  11595319 ggagcttccatccttgttttccaagcat 11595346  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 580 - 668
Target Start/End: Complemental strand, 39530898 - 39530810
Alignment:
Q  580 ttaaatcccgcaagatccttaaatcccattccaccatgccttttgtgaaccgatggtttgtctcacaacaaccaatgcattcctctatt 668  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| ||||||||  ||||||  ||  | ||||||||||||||||||||    
T  39530898 ttaaatgccgcaagatccttaaaacccattcctccatgccttttatgaaccgaaagtttgttccattataaccaatgcattcctctatt 39530810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 186
Target Start/End: Complemental strand, 39532814 - 39532697
Alignment:
Q  67 gagttatccacaatttcttttacacacaaacgatatgcacttcttaccgaataatatccattcttt-catgattccagtacaccaatctatcctcattca 165  Q
    ||||||||||||||||| |  || ||||| ||||| |||| | |||||||||||| |||||||||| |  |||||||   ||| ||| |||||||| | |    
T  39532814 gagttatccacaatttcctccacgcacaagcgatacgcacgttttaccgaataatgtccattcttttccggattcca---cactaatttatcctcagtta 39532718  T
Q  166 cttgcgggtacagcggtatat 186  Q
    |||||||| ||||||||||||    
T  39532717 cttgcgggaacagcggtatat 39532697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 533
Target Start/End: Complemental strand, 39531014 - 39530925
Alignment:
Q  444 ctaggattatgtcctaactttaaaccaaggtaattactatgaggataataccttgccttaaacaccttagcaactagagtatccggttca 533  Q
    |||||||| ||||| | |||| |||||||| |||||||||  || || ||| | ||||||||||||||||| || |||| ||| ||||||    
T  39531014 ctaggattgtgtcccagctttgaaccaaggaaattactatttgggtagtacttagccttaaacaccttagccacaagagaatctggttca 39530925  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 405 - 565
Target Start/End: Complemental strand, 37590360 - 37590200
Alignment:
Q  405 acaaccaattttgagctaaaaata-ttccaccaaacaaatctaggattatgtcctaactttaaaccaaggtaattactatgaggataataccttgcctta 503  Q
    |||||||||||||  ||||| ||| |||  ||||| |||| ||||||| |||||||||||| | ||||| || |||| | ||||| | |||||||| ||     
T  37590360 acaaccaattttgcactaaatatacttcgcccaaaaaaat-taggattgtgtcctaactttgacccaagatagttaccaagaggaaagtaccttgctttg 37590262  T
Q  504 aacaccttagcaactagagtatccggttcagtttgaagcttccatccttgtttcccaagcat 565  Q
    |||||||||| ||| || ||||||| ||||||||||| ||||||||||||||||||||||||    
T  37590261 aacaccttagaaaccagcgtatccgattcagtttgaaacttccatccttgtttcccaagcat 37590200  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 539
Target Start/End: Complemental strand, 33097956 - 33097813
Alignment:
Q  396 ccatgactaacaaccaattttgagctaaaaatattccaccaaacaaatctaggattatgtcctaactttaaaccaaggtaattactatgaggataatacc 495  Q
    ||||| || ||||||| ||||| | |||||||  ||| ||||| ||| ||||||||||||||||| ||| | || || ||||| | ||||||| ||||||    
T  33097956 ccatgcctcacaaccagttttgcgttaaaaatgctccgccaaagaaaactaggattatgtcctaattttgacccgagataattgccatgaggaaaatacc 33097857  T
Q  496 ttgccttaaacaccttagcaactagagtatccggttcagtttga 539  Q
    ||| ||| || ||||| | ||||||||| || ||||||||||||    
T  33097856 ttgacttgaaaaccttggaaactagagtgtctggttcagtttga 33097813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 29206627 - 29206514
Alignment:
Q  18 cactttcaacctccaaatcccaccccaatacccatgccttcttaagtgagagttatccacaatttcttttacacacaaacgatatgcacttcttaccgaa 117  Q
    |||||||||| ||||||| |||| |||||| |||  |||||| | ||| |  |||| |||||| ||||| ||||| | |||||| ||||||  |||||||    
T  29206627 cactttcaacttccaaattccactccaataaccactccttctcaggtgtgtattattcacaatatctttgacacaaagacgatacgcacttggtaccgaa 29206528  T
Q  118 taatatccattctt 131  Q
    ||||  ||||||||    
T  29206527 taatgcccattctt 29206514  T

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