View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_21 (Length: 239)
Name: NF7145_low_21
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3289890 - 3289670
Alignment:
| Q |
1 |
cacaacacaaaaacatatggaaattccaaaaccgaagnnnnnnncacgaccgttgtcgaatgacaaccacacaaatttttacaacacatcctctcaaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3289890 |
cacaacacaaaaacatatggaaattccaaaaccgaagaaaaaaacacgacccttgtcgaatgacaaccacacaaatttttacaacacatcctctcaaaca |
3289791 |
T |
|
| Q |
101 |
cccatcggccctagtacacccagaccgtccaaagaaaatacctaactacatctcacaacactctaagaaaagagcgcaagagaaaagnnnnnnngtcaga |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3289790 |
cccatcggccctagtacacccacaccgtccaaagaaaatacctaactacatctcacaacactctaagaaaagagcgcaagagaaaag-aaaaaagtcaga |
3289692 |
T |
|
| Q |
201 |
tactagtctaaagtgttatata |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
3289691 |
tactagtctaaagtgttatata |
3289670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 1605257 - 1605302
Alignment:
| Q |
129 |
ccaaagaaaatacctaactacatctcacaacactctaagaaaagag |
174 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
1605257 |
ccaaagaaaatacctaactacatctcataacactctaagacaagag |
1605302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 18779990 - 18780034
Alignment:
| Q |
129 |
ccaaagaaaatacctaactacatctcacaacactctaagaaaaga |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
18779990 |
ccaaagaaaatatctaactacatctcacaacactctaagacaaga |
18780034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 25078368 - 25078304
Alignment:
| Q |
110 |
cctagtacacccagaccgtccaaagaaaatacctaactacatctcacaacactctaagaaaagag |
174 |
Q |
| |
|
||||||||| || ||| ||||||| |||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
25078368 |
cctagtacatccgtaccctccaaagcaaatacctaattacatctcacaacactctaagacaagag |
25078304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 14437218 - 14437262
Alignment:
| Q |
130 |
caaagaaaatacctaactacatctcacaacactctaagaaaagag |
174 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
14437218 |
caaagtaaatacctaactacatctcacaacactttaagacaagag |
14437262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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