View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_23 (Length: 228)
Name: NF7145_low_23
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2563765 - 2563989
Alignment:
| Q |
1 |
acaagtatagaggcacctacacagattcttgtccattctactgctcgtactctggttaccaagtaagaaattacagcttgtggaaaagagaatatttaca |
100 |
Q |
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| T |
2563765 |
acaagtatagaggcacctacacaggttcttgtccattctactgctcgtactctggttaccaagtaagaaattacagcttgtggaaaagagaatatttaca |
2563864 |
T |
|
| Q |
101 |
aactaattataacttcttagtatcattcatttatatatg----------gttgtgtaccaaaaggatgaactattatgggctgctgcttggttatacaag |
190 |
Q |
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| T |
2563865 |
aactagttataacttcttagtatcattcatttatggttgtgatttttgaattgtgtatgaaaaggatgaactattatgggctgctgcttggttatacaag |
2563964 |
T |
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| Q |
191 |
gccagtggagaaagcaaatacttga |
215 |
Q |
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| T |
2563965 |
gccagtggagaaagcaagtacttga |
2563989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 2573765 - 2573839
Alignment:
| Q |
141 |
ttgtgtaccaaaaggatgaactattatgggctgctgcttggttatacaaggccagtggagaaagcaaatacttga |
215 |
Q |
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| T |
2573765 |
ttgtgtatgaaaaggatgaattattatgggctgctacttggctatacaaggctagtggggaaagcaaatacttga |
2573839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 2573616 - 2573687
Alignment:
| Q |
3 |
aagtatagaggcacctacacagattcttgtccattctactgctcgtactctggttaccaagtaagaaattac |
74 |
Q |
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||||||||||||| ||| | | |||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2573616 |
aagtatagaggcagttactcgggttcttgcccattctactgctcatactctggttaccaagtaagaaattac |
2573687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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