View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_24 (Length: 220)
Name: NF7145_low_24
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 4323972 - 4324163
Alignment:
| Q |
18 |
ctctttgaagcgactgatcatccttgaaaatgacgattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgtcttctcctcg |
117 |
Q |
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| T |
4323972 |
ctctttgaagcgactgatcatccttgaaaatgaggattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgtcttctcctcg |
4324071 |
T |
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| Q |
118 |
gaaactcaaaaacacgtcatacttttttgttagagccaaatcgttctcaaatggagtgaggttcagatcaagaagcagtgtccttcttctct |
209 |
Q |
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| T |
4324072 |
gaaactcaaaaacacgtcatacttttttgttagagccaaatcgttctcaaatggagtgaggttcagatcaagaagcagtgtccttcttctct |
4324163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4356715 - 4356585
Alignment:
| Q |
18 |
ctctttgaagcgactgatcatccttgaaaatgacgattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgtcttctcctcg |
117 |
Q |
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| T |
4356715 |
ctctttcaagcgactgatcgtccttgaagacaataattccggcgttttgaagagagaaagtaagatgtgaagtgaatgatgctctagtgtcttctcctct |
4356616 |
T |
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| Q |
118 |
gaaactcaaaaacacgtcatacttttttgtt |
148 |
Q |
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| T |
4356615 |
aaaactcaaaaacacatcgtactttcttgtt |
4356585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 4332610 - 4332488
Alignment:
| Q |
20 |
ctttgaagcgactgatcatccttgaaaatgacgattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgtcttctcctcgga |
119 |
Q |
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| T |
4332610 |
ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaa |
4332511 |
T |
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| Q |
120 |
aactcaaaaacacgtcatacttt |
142 |
Q |
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| T |
4332510 |
aactcaagaacacatcgtacttt |
4332488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 4129728 - 4129774
Alignment:
| Q |
53 |
attccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgc |
99 |
Q |
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| T |
4129728 |
attccggcattttgaagagaagaagtgagatgtgaaatgaatgatgc |
4129774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 10034786 - 10034728
Alignment:
| Q |
79 |
gagatgtgaaatgaatgatgcgcgagtgtcttctcctcggaaactcaaaaacacgtcat |
137 |
Q |
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| T |
10034786 |
gagatgtgaaatgaatttcgcgcgaatgtcttcccctctgaaactcaagaacacgtcat |
10034728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 25951828 - 25951861
Alignment:
| Q |
99 |
cgcgagtgtcttctcctcggaaactcaaaaacac |
132 |
Q |
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| T |
25951828 |
cgcgagtatcttctcctcggaaactcaaaaacac |
25951861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 25961079 - 25961112
Alignment:
| Q |
99 |
cgcgagtgtcttctcctcggaaactcaaaaacac |
132 |
Q |
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| T |
25961079 |
cgcgagtatcttctcctcggaaactcaaaaacac |
25961112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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