View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_26 (Length: 205)
Name: NF7145_low_26
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 35356846 - 35356673
Alignment:
| Q |
15 |
agagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaatggtgcactcatgattagattcatcttgtatagatttagtggtattgtaga |
114 |
Q |
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| T |
35356846 |
agagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaatggtgcactcatgattagattcatcttgtataggtttagtggtattgtaga |
35356747 |
T |
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| Q |
115 |
tgaacgagggaatggtgtttataacactcttttccaagccataggcgtgtacgtgtgggacctccaccattgtg |
188 |
Q |
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| T |
35356746 |
tgaacgagggaatggtgtttataacactcttttccaagccataggcgtgtacgtgtgggacctccaccattgtg |
35356673 |
T |
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Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 35351712 - 35351539
Alignment:
| Q |
15 |
agagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaatggtgcactcatgattagattcatcttgtatagatttagtggtattgtaga |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35351712 |
agagggagggtgcgaatgtaatcattgttttcaaattcaaccaagcaaatggtgcactcatgattagattcatcttgtttagatttagtggtattgtaga |
35351613 |
T |
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| Q |
115 |
tgaacgagggaatggtgtttataacactcttttccaagccataggcgtgtacgtgtgggacctccaccattgtg |
188 |
Q |
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||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
35351612 |
tgaacgagggaatagcgtttataacactcttttccaagccacaggcgtgtacgtgtggggcctccaccattgtg |
35351539 |
T |
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