View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_low_3 (Length: 617)

Name: NF7145_low_3
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_low_3
NF7145_low_3
[»] chr6 (5 HSPs)
chr6 (28-334)||(26694337-26694639)
chr6 (365-600)||(26694058-26694291)
chr6 (52-84)||(738461-738493)
chr6 (413-449)||(9027452-9027488)
chr6 (113-180)||(32177521-32177589)
[»] chr5 (3 HSPs)
chr5 (410-440)||(5563584-5563614)
chr5 (405-443)||(27565304-27565342)
chr5 (413-441)||(11667067-11667095)
[»] chr3 (1 HSPs)
chr3 (414-443)||(49587086-49587115)
[»] chr8 (1 HSPs)
chr8 (417-449)||(14949759-14949791)
[»] chr4 (1 HSPs)
chr4 (411-443)||(32231016-32231048)
[»] chr1 (3 HSPs)
chr1 (228-264)||(27070647-27070683)
chr1 (413-445)||(44180586-44180618)
chr1 (51-83)||(52014006-52014038)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 28 - 334
Target Start/End: Complemental strand, 26694639 - 26694337
Alignment:
Q  28 ctttatttgagctgctcagctcatgtttggatgaacttatttgagcttatctattgatattcaataattatttagaaattattcataagatatttttagg 127  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26694639 ctttatttgagctgctcagctcatgcttggatgaacttatttgagcttatctattgatattcaataattatttagaaattattcataagatatttttagg 26694540  T
Q  128 aaaagcagaagctgtttcgtgtttgtctaccgtagtgaaaatcacttctttttnnnnnnnnnnnnnnncacttcacagaaatgattttcatgaaatgctt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||    
T  26694539 aaaagcagaagctgtttcgtgtttgtctaccgtagtgaaaatcacttctttt----aaaaaaaaaaaacacttcacagaaatgattttcatgaaatgctt 26694444  T
Q  228 ctaaaagcaacttctcatttgaagcactttttagatttatttctttcagtttacaatcttttcaaaaagccttatcaaagagatgaaaactttctaaagt 327  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  26694443 ctaaaagcaacttctcatttgaagcaccttttagatttatttctttcagtttatcatcttttcaaaaagccttaacaaagagatgaaaactttctaaagt 26694344  T
Q  328 gaacata 334  Q
    || ||||    
T  26694343 gagcata 26694337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 365 - 600
Target Start/End: Complemental strand, 26694291 - 26694058
Alignment:
Q  365 aagaaagagctgtaacaaacaggtcttatatgatataggattatactgtaagcgcttaattaaactgtttatccaaacagtgcttaagttgctcagctct 464  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26694291 aagaaagagctgtatcaaacaggtcttatatgatataggattattctgtaagcgcttaattaaactgtttatccaaacagtgcctaagttgctcagctct 26694192  T
Q  465 tgtgcttctctcagtgatttttacatttatattttttcttcttcttaaactgtcaaggttcatgaaggaaacattgtgaagatagtttggctaccaccag 564  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  26694191 tgtgcttctctcagtgatttttacatttatattttt--ttcttcttaaactgtcaaggttcatgaaggaaacattgtgaagatagtttggtttccaccag 26694094  T
Q  565 agtatggtgatgcagttgcatgtgtttccgctgatg 600  Q
    ||||||||||||||||||||||||||||||||||||    
T  26694093 agtatggtgatgcagttgcatgtgtttccgctgatg 26694058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 738461 - 738493
Alignment:
Q  52 gtttggatgaacttatttgagcttatctattga 84  Q
    |||||||| ||||||||||||||||||||||||    
T  738461 gtttggattaacttatttgagcttatctattga 738493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 9027488 - 9027452
Alignment:
Q  413 taagcgcttaattaaactgtttatccaaacagtgctt 449  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  9027488 taagcgcttacttaaactgtttatccaaacagggctt 9027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 32177521 - 32177589
Alignment:
Q  113 taagatatttttaggaaaagcagaagctgtttcgtgtttgtctaccgtagtgaaaatcac-ttcttttt 180  Q
    |||||||||||||  ||||||| ||| ||||| || |||||||||| || |||||||||| ||||||||    
T  32177521 taagatatttttaacaaaagcacaagttgttttgtatttgtctaccataatgaaaatcacattcttttt 32177589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 440
Target Start/End: Complemental strand, 5563614 - 5563584
Alignment:
Q  410 ctgtaagcgcttaattaaactgtttatccaa 440  Q
    |||||||||||||||||||||||||||||||    
T  5563614 ctgtaagcgcttaattaaactgtttatccaa 5563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 443
Target Start/End: Original strand, 27565304 - 27565342
Alignment:
Q  405 ttatactgtaagcgcttaattaaactgtttatccaaaca 443  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  27565304 ttatactataagcgcttaattaagctgtttatccaaaca 27565342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 11667095 - 11667067
Alignment:
Q  413 taagcgcttaattaaactgtttatccaaa 441  Q
    |||||||||||||||||||||||||||||    
T  11667095 taagcgcttaattaaactgtttatccaaa 11667067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 443
Target Start/End: Original strand, 49587086 - 49587115
Alignment:
Q  414 aagcgcttaattaaactgtttatccaaaca 443  Q
    ||||||||||||||||||||||||||||||    
T  49587086 aagcgcttaattaaactgtttatccaaaca 49587115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 14949791 - 14949759
Alignment:
Q  417 cgcttaattaaactgtttatccaaacagtgctt 449  Q
    |||||||||||||||||||||||||||| ||||    
T  14949791 cgcttaattaaactgtttatccaaacagggctt 14949759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 443
Target Start/End: Original strand, 32231016 - 32231048
Alignment:
Q  411 tgtaagcgcttaattaaactgtttatccaaaca 443  Q
    |||||||||||||||||| ||||||||||||||    
T  32231016 tgtaagcgcttaattaaagtgtttatccaaaca 32231048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 27070647 - 27070683
Alignment:
Q  228 ctaaaagcaacttctcatttgaagcactttttagatt 264  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  27070647 ctaaaaacaacttctcatttgaagcagtttttagatt 27070683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 44180618 - 44180586
Alignment:
Q  413 taagcgcttaattaaactgtttatccaaacagt 445  Q
    |||| ||||||||||||||||||||||||||||    
T  44180618 taagtgcttaattaaactgtttatccaaacagt 44180586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 52014038 - 52014006
Alignment:
Q  51 tgtttggatgaacttatttgagcttatctattg 83  Q
    ||||||||| |||||||||||||||||||||||    
T  52014038 tgtttggattaacttatttgagcttatctattg 52014006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University