View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_low_6 (Length: 445)

Name: NF7145_low_6
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_low_6
NF7145_low_6
[»] chr6 (4 HSPs)
chr6 (1-437)||(3255647-3256092)
chr6 (87-180)||(7813983-7814076)
chr6 (95-219)||(7871216-7871340)
chr6 (85-156)||(7806822-7806893)
[»] chr4 (4 HSPs)
chr4 (89-219)||(14017655-14017785)
chr4 (227-429)||(14020277-14020483)
chr4 (264-436)||(14271406-14271579)
chr4 (300-434)||(14017848-14017982)
[»] chr1 (1 HSPs)
chr1 (71-191)||(37997616-37997736)
[»] chr7 (1 HSPs)
chr7 (78-169)||(19317704-19317795)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 3256092 - 3255647
Alignment:
Q  1 ttttatattgtggttttaggtcttctatgatgatctgactttgtgtcagaggtcttctggttcac---------ttaataatgatggaaacagtttggtc 91  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  3256092 ttttatattgttgttttaggtctgctatgatgatctgactttgtgtcagaggtcttctggttcacagcaggcacttaataatgatggaaacagtttggtc 3255993  T
Q  92 gatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtgga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255992 gatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtgga 3255893  T
Q  192 gcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcct 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255892 gcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcct 3255793  T
Q  292 gctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatgg 391  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3255792 gctctctcctcgtgcaacaaatcaacccctcaaaatgtttcgcctcaagtgtcgttttaaagaccacaatcaaaagggtccatttaatgtgacagaatgg 3255693  T
Q  392 ctagaagcctcaaaacagcgtagtattgaggaagttcatctcactc 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3255692 ctagaagcctcaaaacagcgtagtattgaggaagttcatctcactc 3255647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 7813983 - 7814076
Alignment:
Q  87 tggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttc 180  Q
    |||| ||||||||||| |||||||||||||||||||||   |||||||| | |||||||||||| |||||| ||||| ||||||| || |||||    
T  7813983 tggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttc 7814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 7871216 - 7871340
Alignment:
Q  95 agaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagca 194  Q
    |||||||||  |||||| |||||||| |||    ||||||| | ||| |||||||| |||||| |||||||||||||  ||||||| |||||||||| |     
T  7871216 agaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcc 7871315  T
Q  195 aactatgttgttcactacctgttct 219  Q
     |||||| | |||||| ||||||||    
T  7871316 cactatgctattcactccctgttct 7871340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 7806893 - 7806822
Alignment:
Q  85 tttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaact 156  Q
    ||||||||||||||| ||||||||||| ||||||||| |||   ||||||| | |||||||| ||| |||||    
T  7806893 tttggtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaact 7806822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 14017655 - 14017785
Alignment:
Q  89 gtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggt 188  Q
    ||||||||||| || |||||| | |||||||||||||  ||||| ||||||||||||||||||||  |  ||||||||||| | |||||||||||| |||    
T  14017655 gtcgatagaattagcgatttatcagatgagttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggt 14017754  T
Q  189 ggagcaaactatgttgttcactacctgttct 219  Q
    ||| ||||||||| | || ||| ||||||||    
T  14017755 ggaccaaactatgctatttactccctgttct 14017785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 429
Target Start/End: Original strand, 14020277 - 14020483
Alignment:
Q  227 gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc 322  Q
    |||||||||| || ||| |||||||| | ||| |   |||||||| |||||||  |||||||| |||||||||||| |||||| || ||||    || ||    
T  14020277 gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc 14020376  T
Q  323 aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg 422  Q
    |||| |||| ||||||| | || || || | ||| ||| |||||  ||||||||||||||||| |||||||||||||| ||||| ||||| |||| ||||    
T  14020377 aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg 14020476  T
Q  423 aagttca 429  Q
    || ||||    
T  14020477 aacttca 14020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 14271406 - 14271579
Alignment:
Q  264 gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca 363  Q
    ||||||| | ||||||  ||| |||| ||||||||| ||||||||| ||  ||||| |||||| |||| ||||||| | || ||||  |  || ||| ||    
T  14271406 gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca 14271505  T
Q  364 aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcact 436  Q
    |||   |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||| ||||||    
T  14271506 aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaacttcacctcact 14271579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 434
Target Start/End: Original strand, 14017848 - 14017982
Alignment:
Q  300 ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc 399  Q
    |||||| ||| ||||||||| ||||||  ||| ||||||| ||||  ||||  || ||||| |||||  || |||||||| ||| | |||||||||||||    
T  14017848 ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc 14017947  T
Q  400 ctcaaaacagcgtagtattgaggaagttcatctca 434  Q
    | ||||||  | | ||||||||||| |||||||||    
T  14017948 cacaaaacgacattgtattgaggaatttcatctca 14017982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 37997736 - 37997616
Alignment:
Q  71 aatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaa 170  Q
    |||| ||| |||| ||||| |||||||||||| |||||||| ||||||||||||    |||| || | |||||| ||||  |||||| |||| |||||||    
T  37997736 aatggtggcaacaatttggacgatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaa 37997637  T
Q  171 cagttctttcgaaacggtgga 191  Q
    | |||||||| || |||||||    
T  37997636 ctgttctttcaaagcggtgga 37997616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 19317795 - 19317704
Alignment:
Q  78 gaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactaca 169  Q
    |||||||||  || |||||||| || |||||||| ||||||||||||    ||||||| | ||||||||||||||||||  |||| ||||||    
T  19317795 gaaacagttcagtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactaca 19317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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