View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_low_8 (Length: 348)

Name: NF7145_low_8
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_low_8
NF7145_low_8
[»] chr6 (3 HSPs)
chr6 (18-336)||(13778507-13778825)
chr6 (104-196)||(20246701-20246793)
chr6 (104-196)||(22140685-22140777)
[»] scaffold0183 (2 HSPs)
scaffold0183 (51-296)||(12693-12937)
scaffold0183 (291-336)||(14515-14560)
[»] chr8 (2 HSPs)
chr8 (154-336)||(24969908-24970090)
chr8 (95-334)||(24969635-24969859)
[»] chr5 (3 HSPs)
chr5 (71-261)||(22851892-22852082)
chr5 (143-268)||(23659978-23660103)
chr5 (143-268)||(23798467-23798592)
[»] scaffold0401 (1 HSPs)
scaffold0401 (73-204)||(2963-3094)
[»] chr1 (1 HSPs)
chr1 (164-267)||(22507849-22507952)
[»] chr2 (1 HSPs)
chr2 (71-261)||(25115819-25116009)
[»] chr7 (1 HSPs)
chr7 (166-267)||(18454009-18454110)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 13778825 - 13778507
Alignment:
Q  18 cagactttccttcatagttggaaagtatgataatgtgtggtttcaggtcggactctgacaaaccaatcttttttaagagaaactgtggcaacaaatttac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778825 cagactttccttcatagttggaaagtatgataatgtgtggtttgaggtcggactctgacaaaccaatcttttttaagagaaactgtggcaacaaatttac 13778726  T
Q  118 agcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778725 agcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagt 13778626  T
Q  218 ttctcaaacattgcctgttcaccttcgacacaaccactatccataacataagagcacagtggtttgtgaaccgccatctcttcagtgaaatctccctcgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  13778625 ttctcaaacattgcctgttcaccttcgacacaaccactatccataacataatagcacagtggtttgtgaaccgccatctcttgagtgaaatctccctcgt 13778526  T
Q  318 cctcagtaatttctgatgt 336  Q
    |||||||||||||||||||    
T  13778525 cctcagtaatttctgatgt 13778507  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 20246701 - 20246793
Alignment:
Q  104 ggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga 196  Q
    |||| ||||||||||||||||||||||||||  | ||||||||| || ||||  | ||  | ||| |||||||| |||||||  |||||||||    
T  20246701 ggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatga 20246793  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 22140685 - 22140777
Alignment:
Q  104 ggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga 196  Q
    |||| ||||||||||||||||||||||||||  | ||||||||| || ||||  | ||  | ||| |||||||| |||||||  |||||||||    
T  22140685 ggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatga 22140777  T

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Target: scaffold0183 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 51 - 296
Target Start/End: Original strand, 12693 - 12937
Alignment:
Q  51 tgtgtggtttcaggtcggactctgacaaaccaatcttttttaagagaaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaat 150  Q
    ||||||||||||  || || |||||||||||||||||||  |||| ||||| ||||| ||||||||||||| || ||||||| ||  | |||||||| ||    
T  12693 tgtgtggtttcaaatcagattctgacaaaccaatcttttc-aagaaaaactatggcagcaaatttacagcaacaacaccatcaatacgtactttgttgat 12791  T
Q  151 cccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaa 250  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||    
T  12792 cccaatatcattgattttagcttggataaacaaaggcttaagatgacttttcatgtaatgatcaggtttctcaaacattgcatgttcacctttgacacaa 12891  T
Q  251 ccactatccataacataagagcacagtggtttgtgaaccgccatct 296  Q
    ||  |||||||||||||| |||| ||||||||||||||||||||||    
T  12892 ccgttatccataacataatagcatagtggtttgtgaaccgccatct 12937  T

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Target: scaffold0183; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 14515 - 14560
Alignment:
Q  291 ccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgt 336  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||    
T  14515 ccatctctttagtgaaatctccctcgtcttcagtaatttatgatgt 14560  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 336
Target Start/End: Original strand, 24969908 - 24970090
Alignment:
Q  154 aacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaacca 253  Q
    |||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||| |||||| || |||||||||||||||||||||    
T  24969908 aacattgttgattttagcttggataaacatgggcttgagatgacttttcatgtgatgattaggtttcttaaacatggcttgttcaccttcgacacaacca 24970007  T
Q  254 ctatccataacataagagcacagtggtttgtgaaccgccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgt 336  Q
     | |||||||| ||| ||||||||||||| ||||| | ||| || |||||||||||||||| ||| | ||| |||||||||||    
T  24970008 ttgtccataacgtaatagcacagtggtttatgaacagtcatttcctcagtgaaatctcccttgtctttagtgatttctgatgt 24970090  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 334
Target Start/End: Original strand, 24969635 - 24969859
Alignment:
Q  95 agaaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatccc-aacattattgattttagcttggataaacaaaggcttaaga 193  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||| | ||| |||||| ||||||||||||||||||||||   | || |||    
T  24969635 agaaattgtggcaacaaatttacagcagcaccacaatcgacaagcacattgtttacccccaacattgttgattttagcttggataaacatgagtttgaga 24969734  T
Q  194 tgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataacataagagcacagtggtttgtgaaccgcca 293  Q
    ||||||||||||||||||| | ||||||||||                | |||||||||| | |||||||| ||| ||||||||||||| ||||| | ||    
T  24969735 tgacttttcatgtgatgattaggtttctcaaa----------------tggacacaaccattgtccataacgtaatagcacagtggtttatgaacagtca 24969818  T
Q  294 tctcttcagtgaaatctccctcgtcctcagtaatttctgat 334  Q
    | || |||||||||||||||| ||| | ||| |||||||||    
T  24969819 tttcctcagtgaaatctcccttgtctttagtgatttctgat 24969859  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 22851892 - 22852082
Alignment:
Q  71 tctgacaaaccaatcttttttaagagaaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttag 170  Q
    ||||||||  ||||||||||| ||||| | || ||||| | |||||| || |||||||| || |  ||||| ||||| ||||||||||  || || ||||    
T  22851892 tctgacaagtcaatcttttttcagagacagtgcggcaatagatttaccgctgcaccaccgtctaccagcaccttgtttatcccaacatctttaatcttag 22851991  T
Q  171 cttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccat 261  Q
    | ||||| |||||||| |||||||||  || ||||| ||||||| || | || ||||| || ||||  ||||| ||||||||| |||||||    
T  22851992 catggatgaacaaaggtttaagatgatgttgcatgtcatgatcatgtctttcgaacatagcttgttagccttctacacaaccattatccat 22852082  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 23660103 - 23659978
Alignment:
Q  143 ttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcacctt 242  Q
    ||||| || ||||||| ||  |||||||||||||| ||||||||||| || |||  || |||||||| |||| || | || ||||| ||||| |  ||||    
T  23660103 ttgtttattccaacatcatcaattttagcttggatgaacaaaggcttgaggtgatgttgcatgtgataatcaggtctttcgaacatagcctgctggcctt 23660004  T
Q  243 cgacacaaccactatccataacataa 268  Q
    | ||||||||| ||||||| ||||||    
T  23660003 caacacaaccattatccatcacataa 23659978  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 23798467 - 23798592
Alignment:
Q  143 ttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcacctt 242  Q
    ||||| || ||||||| ||  |||||||||||||| ||||||||||| || |||  || |||||||| |||| || | || ||||| ||||| |  ||||    
T  23798467 ttgtttattccaacatcatcaattttagcttggatgaacaaaggcttgaggtgatgttgcatgtgataatcaggtctttcgaacatagcctgctggcctt 23798566  T
Q  243 cgacacaaccactatccataacataa 268  Q
    | ||||||||| ||||||| ||||||    
T  23798567 caacacaaccattatccatcacataa 23798592  T

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Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 3094 - 2963
Alignment:
Q  73 tgacaaaccaatcttttttaagagaaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagct 172  Q
    |||||||| |||||||||||||||  | ||||| || | ||| || ||||| |||||||| |  ||||||||||| | |||||  || || |||||||||    
T  3094 tgacaaactaatcttttttaagagggattgtggtaatagattcacggcagcgccaccatcaagtagcactttgtttaccccaatgttgttaattttagct 2995  T
Q  173 tggataaacaaaggcttaagatgacttttcat 204  Q
    ||| | |||||||| || |||||||| |||||    
T  2994 tgggtgaacaaaggtttgagatgactcttcat 2963  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 22507849 - 22507952
Alignment:
Q  164 attttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataa 263  Q
    ||||| ||||||||||||| ||| || |||||||| ||||| |||| |||| || |||| ||||| || ||||  ||||||||||| | | ||| |||||    
T  22507849 attttggcttggataaacagaggtttgagatgactattcatatgataatcaggtctctcgaacatagcatgttggccttcgacacatcaattattcataa 22507948  T
Q  264 cata 267  Q
    ||||    
T  22507949 cata 22507952  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 25115819 - 25116009
Alignment:
Q  71 tctgacaaaccaatcttttttaagagaaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttag 170  Q
    |||||||| |||||||||||||||||| | || ||||| | |||||| |  ||||| ||||| |   |||| ||||| || ||||||| ||| || ||||    
T  25115819 tctgacaagccaatcttttttaagagacagtgcggcaatagatttaccgttgcacctccatctacctgcaccttgtttattccaacatcattaatcttag 25115918  T
Q  171 cttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccat 261  Q
    |   ||  |||||| | |||||||||  || ||||||||||||| || | || ||||| || ||||  ||||| ||||||||| |||||||    
T  25115919 ccgagaagaacaaatgtttaagatgatgttgcatgtgatgatcaggtctttcgaacatagcttgttggccttctacacaaccattatccat 25116009  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 18454110 - 18454009
Alignment:
Q  166 tttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataaca 265  Q
    |||||| | |||||||| ||| || |||||| | ||||| || | |||| || |||||||||| || ||||  ||||||||||||||| ||| |||||||    
T  18454110 tttagccttgataaacagaggtttgagatgaatcttcatatggtaatcaggtctctcaaacatagcatgttggccttcgacacaaccattattcataaca 18454011  T
Q  266 ta 267  Q
    ||    
T  18454010 ta 18454009  T

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