View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_low_9 (Length: 333)
Name: NF7145_low_9
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 49 - 328
Target Start/End: Complemental strand, 6256389 - 6256111
Alignment:
| Q |
49 |
agtatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacaaatacacaaaatagaaattacatttgatgttgcaaa |
148 |
Q |
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| T |
6256389 |
agtatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacaaatacacaaaatagaaattacatttgatgttgcaaa |
6256290 |
T |
|
| Q |
149 |
aagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactcaacnnnnnnnnncccctggaaacctgctaccttaacataa |
248 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6256289 |
aagagtacaattaaggagggccttaaaataaagggcgcctctccaccaaaatcaaaactcaac-gataaaaacccctggaaacctgctaccttaacataa |
6256191 |
T |
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| Q |
249 |
cagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaac |
328 |
Q |
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||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6256190 |
cagaaaccaaaatagcaataaaagctatccagaagcaacttcaaaacacgctagcaagcctcccaaacacaacaccaaac |
6256111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 49 - 328
Target Start/End: Original strand, 51207445 - 51207722
Alignment:
| Q |
49 |
agtatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacaaatacacaaaatagaaattacatttgatgttgcaaa |
148 |
Q |
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| T |
51207445 |
agtatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacaaatacacaaaatagaaattacatttgatgttgcaaa |
51207544 |
T |
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| Q |
149 |
aagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactcaacnnnnnnnnncccctggaaacctgctaccttaacataa |
248 |
Q |
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| T |
51207545 |
aagagtacaattaaggagggcc-taaaacaaagggtgcctctccaccaaaatcaaaactc-accaaaaaaaacccctggaaacctgctaccttaacataa |
51207642 |
T |
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| Q |
249 |
cagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaac |
328 |
Q |
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| T |
51207643 |
cagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagagggcctcccaaacacaacaccaaac |
51207722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 88 - 327
Target Start/End: Original strand, 43429909 - 43430134
Alignment:
| Q |
88 |
caatacaaatgtgaattacatcacaaa-tacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaatgggcgc |
186 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
43429909 |
caatgcaaatgtgaattacatcacaaaatacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaaagggtgc |
43430008 |
T |
|
| Q |
187 |
ctctccaccaaaatcaaaactcaacnnnnnnnnncccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaa |
286 |
Q |
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| T |
43430009 |
ctctccaccaaaatcaaaactcaacaaaaaaaa--ccctggaaacctgct-------------agaaaccaaaatagcaataaaagccagccagaagcaa |
43430093 |
T |
|
| Q |
287 |
ctccaaaacacgctagcaagcctcccaaacacaacaccaaa |
327 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
43430094 |
ctccgaaacacgctagcaagcctcccaaacacaacaccaaa |
43430134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 43429891 - 43429931
Alignment:
| Q |
49 |
agtatataatttgctttacaatgcaaatgtgaatcacatca |
89 |
Q |
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| T |
43429891 |
agtatataatttgctttacaatgcaaatgtgaattacatca |
43429931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 54523875 - 54523968
Alignment:
| Q |
117 |
cacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactcaa |
210 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
54523875 |
cacaaaatagaaattacatttgatgttgtaaaaaaagtacaattaaggagggctttaaaacaaagggctcctctccaccaaaatcaaaactcaa |
54523968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 54523833 - 54523866
Alignment:
| Q |
49 |
agtatataatttgctttacaatgcaaatgtgaat |
82 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
54523833 |
agtatataatttgctttacaatacaaatgtgaat |
54523866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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