View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7146_high_3 (Length: 336)
Name: NF7146_high_3
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7146_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 39312151 - 39311844
Alignment:
| Q |
18 |
aatggttgtttgttaatttgtgtgtatgtatgcatatatatcacagagtgaagagaga--tgtttttctgacaaaatttgttgacgttgaatacaaagtc |
115 |
Q |
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| T |
39312151 |
aatggttgtttgctaatttgtgtgtatgtatgcatatatatcacagagtgaagagagagatgtttttctgacaa--tttgttgacgttgaatacaaagtc |
39312054 |
T |
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| Q |
116 |
atttgacttttgtgcatattttgaaaaggtaagacattgaaataaacacacacagtgtcaaatacaatacctgtattttaatgttcaaataacacaactc |
215 |
Q |
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| T |
39312053 |
atttgacttttgtgcatattttgaaaaagtaagacattgaaataaacacacacagtgtcaaatacaatacctgtattttaatgttcaaataacacaactg |
39311954 |
T |
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| Q |
216 |
gaatgaagatgaggatgtagtcataccataacatcgcagcagaaccaactgtgagcctcaagtaaggccaaattcctatgaaggctttcacagtgaaacc |
315 |
Q |
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| T |
39311953 |
gaatgaaaatgaggatgtagtcataccataacatcgcagcagaagcaactgtgagcttcaagtaaggccaaattcctatgaaggctttcacagtgaaacc |
39311854 |
T |
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| Q |
316 |
aatgcaagtt |
325 |
Q |
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||| |||||| |
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| T |
39311853 |
aatccaagtt |
39311844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 196 - 325
Target Start/End: Complemental strand, 39316450 - 39316321
Alignment:
| Q |
196 |
atgttcaaataacacaactcgaatgaagatgaggatgtagtcataccataacatcgcagcagaaccaactgtgagcctcaagtaaggccaaattcctatg |
295 |
Q |
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| T |
39316450 |
atgttcaaataacataattggagtgaaaataagcatgtagtcataccataacatcacagcagaagcaactgtaagcttaaagtaaggccaaattcctatg |
39316351 |
T |
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| Q |
296 |
aaggctttcacagtgaaaccaatgcaagtt |
325 |
Q |
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| T |
39316350 |
aaggccttcatagtgaagccagtccaagtt |
39316321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 7248650 - 7248622
Alignment:
| Q |
187 |
tgtattttaatgttcaaataacacaactc |
215 |
Q |
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| T |
7248650 |
tgtattttaatgttcaaataacacaactc |
7248622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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