View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7146_high_8 (Length: 241)
Name: NF7146_high_8
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7146_high_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 47016710 - 47016929
Alignment:
| Q |
22 |
gttcagacatcatatcggtaaactggacatcttccaagtgattacatttccattatctactcattgagaaactatggcattctcaatgtataagccaact |
121 |
Q |
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| T |
47016710 |
gttcagacatcatatcggtaaactggacatcttccaagtgattacatttccattatctactcattgagaaactatggcattctcaatgtatacgccaact |
47016809 |
T |
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| Q |
122 |
gaagcggggaagaaagagaaggtcaagtgctgtccatttcatcccagcaaaggtgtaggatcttcaccttgtacatatgttacttattagataaccttcc |
221 |
Q |
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| T |
47016810 |
gaagcggggaagaaagagaaggtcaagtgctgtccatttcatcccagcaaaggtgtaggatcttcaccttgtacatatgttacttattggataaccttcc |
47016909 |
T |
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| Q |
222 |
aaaattgctttctccataac |
241 |
Q |
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| T |
47016910 |
aaaattgctttctccataac |
47016929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 10717326 - 10717406
Alignment:
| Q |
161 |
catcccagcaaaggtgtaggatcttcaccttgtacatatgttacttattagataaccttccaaaattgctttctccataac |
241 |
Q |
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| T |
10717326 |
catcctagcaaagaagtaggatcttcatcttgtacatatgttatttattgggcacccttccaaaatcgctttctccataac |
10717406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 47045530 - 47045609
Alignment:
| Q |
162 |
atcccagcaaaggtgtaggatcttcaccttgtacatatgttacttattagataaccttccaaaattgctttctccataac |
241 |
Q |
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| T |
47045530 |
atcccagcaaagaagttggatcttcatcttgcacatatgttatttattgggcacccttccaaaatcgctttctccataac |
47045609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 10716384 - 10716304
Alignment:
| Q |
161 |
catcccagcaaaggtgtaggatcttcaccttgtacatatgttacttattagataaccttccaaaattgctttctccataac |
241 |
Q |
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| T |
10716384 |
catcccatcaaagaagtaggatcttcatcttgtacatattttatttattgggcacccttccaaaatcgttttctccataac |
10716304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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