View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7146_low_10 (Length: 296)
Name: NF7146_low_10
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7146_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 42086270 - 42086006
Alignment:
| Q |
15 |
ctgtgcggaagattcatccaaagagaataataacaagctaaaccataaccactagcaccactaaaaacaacatgaaaaacaccaagttctttagcaacgg |
114 |
Q |
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| T |
42086270 |
ctgtgcggaagattcatccaaagagaataataacaagctaaaccataaccactagcaccactaaaaacaacatgaaaaacaccaagttctttagcaacgg |
42086171 |
T |
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| Q |
115 |
ttgaagtccagccaaagaaaatatcagaaataatacatagtttatggttaggttgttgggttaagatgttttggatgatgtttttgaaggaaggttttaa |
214 |
Q |
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| T |
42086170 |
ttgaagtccaaccaaagaaaatatcagaaataatacatagtttatggttaggttgttgggttaagatgttttggatgatgtatttgaaggaaggttttaa |
42086071 |
T |
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| Q |
215 |
ggaaagagaagcttggatgagtttgatgacaagattgtaagggacagtatcagtgttttctgtgt |
279 |
Q |
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| T |
42086070 |
ggaaagagaagcttggatgagtttgatgacaagattgtaagggacagtatcagtgttttctgtgt |
42086006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 42081895 - 42081783
Alignment:
| Q |
167 |
ttgttgggttaagatgttttggatgatgtttttgaaggaaggttttaaggaaagagaagcttggatgagtttgatgacaagattgtaagggacagtatca |
266 |
Q |
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| T |
42081895 |
ttgtttggttatgatgttttggatgatgtttttgaaggatggttttaaggaaagagaagtttgtatacgtttgatgacaagattgcaaggaacagtctca |
42081796 |
T |
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| Q |
267 |
gtgttttctgtgt |
279 |
Q |
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| T |
42081795 |
atgttttctgtgt |
42081783 |
T |
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