View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7146_low_11 (Length: 289)
Name: NF7146_low_11
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7146_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 39311675 - 39311408
Alignment:
| Q |
9 |
tgatgattaacaatagtctgcgcctgcgaagacctctgcattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcgaacatttgac |
108 |
Q |
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| T |
39311675 |
tgatgattaacaatattctgcgcctgcgaagacctctgaattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcgaacatttgac |
39311576 |
T |
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| Q |
109 |
cttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaaaatgtaagat |
208 |
Q |
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| T |
39311575 |
cttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaaaatgtaagat |
39311476 |
T |
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| Q |
209 |
gatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccacacacag |
276 |
Q |
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| T |
39311475 |
gatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccacacacag |
39311408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 39316121 - 39315885
Alignment:
| Q |
40 |
acctctgcattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcgaacatttgaccttgtgcagcaatgctctctgtctgccccat |
139 |
Q |
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| T |
39316121 |
acctctgcattggacagctgaatgcaaatgcgtagagttgcggaataagtccacgagcgaacacttgaccttgcacggctatgctctctgtctgtcctat |
39316022 |
T |
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| Q |
140 |
ggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctctctgcaatgtgatgcacattgct |
239 |
Q |
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| T |
39316021 |
gacttttagaaaatctccagagaaccaatagagaaatgtgagaatcactgctgcaccaaaatgtaagatgattgctctctgcaatgttatgcacattgct |
39315922 |
T |
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| Q |
240 |
gcatgttttttggctccataagcttgtccacacacag |
276 |
Q |
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| T |
39315921 |
gcatgctttttggctccataagcttgtccacacacag |
39315885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 38137017 - 38137248
Alignment:
| Q |
40 |
acctctgcattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcgaacatttgaccttgtgcagcaatgctctctgtctgccccat |
139 |
Q |
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| T |
38137017 |
acctctgcaagggacagctgaatgcaaatgcatagagttgaggaataagtccatgagcgaacacttgaccttgcacggttatgctctccgtctgtcctat |
38137116 |
T |
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| Q |
140 |
ggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctctctgcaatgtgatgcacattgct |
239 |
Q |
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| T |
38137117 |
gacttttagaaaatctccggagaaccaatagagaaatgttagaatgactgctgcaccaaaatgtaagatgaatgctctttgcaaagtgatgcacattgct |
38137216 |
T |
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| Q |
240 |
gcatgttttttggctccataagcttgtccaca |
271 |
Q |
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| T |
38137217 |
gcatgttttttggctccataagcttgtccaca |
38137248 |
T |
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