View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7146_low_12 (Length: 272)
Name: NF7146_low_12
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7146_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38421848 - 38422089
Alignment:
| Q |
18 |
ccgcgataatggc-aacacgttgcaccaccatatccgagtatggc----accgtggcgccactattcttcacaaaattggccatgacggaaagacagaat |
112 |
Q |
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| T |
38421848 |
ccgcgataatggccaacacgttgcaccaccatatccgagtatggatggtaccgtggcgccactattcttcacaaaattggccatgacggaaagacagaat |
38421947 |
T |
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| Q |
113 |
cccacaaccaatatctgtcatggccgatattcgacaacactggaaatgaccttcttaaaggtggtaatttgctgctaagaatatgagaggaaaatgtaat |
212 |
Q |
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| T |
38421948 |
cccacaaccaatatctgtcatggccgatattcgacaacactggaaatgaccttcttaaaggtggtaatttgctgctaagaatatgagaggaaaatgtaat |
38422047 |
T |
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| Q |
213 |
aagatgtcaccattatatctgttgcatcaatataggttattc |
254 |
Q |
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| T |
38422048 |
aagatgtcaccattatatctgttgcatcaatataggttattc |
38422089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 38414756 - 38414960
Alignment:
| Q |
45 |
ccatatccgagtatggcaccgtggcgccactattcttcacaaaattggccatgacggaaagacagaatcccacaaccaatatctgtcatggccgatattc |
144 |
Q |
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| T |
38414756 |
ccatatccgaatatggctccgtggtgccgctgctcttcagaaa-ttggccatggtagaaagccaaaaacccgtcaccaatatttgccatg-ccgatattt |
38414853 |
T |
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| Q |
145 |
gacaacactggaaatgaccttcttaaaggtggtaatttgctgctaagaatatgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaata |
244 |
Q |
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| T |
38414854 |
gacgacactggaaaggacctt---aaaggtggtaatttgttgcaaagagtatgagaggaaaatgtaataagttgtcaccattatatctgttgcatcaata |
38414950 |
T |
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| Q |
245 |
taggttattc |
254 |
Q |
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| T |
38414951 |
ttggttattc |
38414960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 34765234 - 34765145
Alignment:
| Q |
65 |
gtggcgccactattcttcacaaaattggccatgacggaaagacagaatcccacaaccaatatctgtcatggccgatattcgacaacactg |
154 |
Q |
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| T |
34765234 |
gtggcgccgccatccttcacaaaattggccatggcgaaaagccaaaaacccgccactgatatctgccatggctgatatttgacaacactg |
34765145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 33710986 - 33710886
Alignment:
| Q |
56 |
tatggcaccgtggcgccactattcttcacaaaattggccatgacggaaagacagaatcccacaaccaatat-ctgtcatggccgatattcgacaacactg |
154 |
Q |
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| T |
33710986 |
tatggcgccatggcgccaccatccttcagaaaattggccatggagtaaagccaaaaaacccccaccaatatcctgccatggccgatatttgacaacactg |
33710887 |
T |
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| Q |
155 |
g |
155 |
Q |
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| |
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| T |
33710886 |
g |
33710886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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