View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7146_low_4 (Length: 546)

Name: NF7146_low_4
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7146_low_4
NF7146_low_4
[»] chr6 (4 HSPs)
chr6 (2-525)||(3846235-3846771)
chr6 (451-500)||(3846780-3846829)
chr6 (214-288)||(20703431-20703506)
chr6 (213-299)||(2271153-2271239)
[»] chr5 (12 HSPs)
chr5 (215-299)||(16829229-16829313)
chr5 (218-295)||(35463984-35464061)
chr5 (214-295)||(11417418-11417500)
chr5 (250-295)||(30908911-30908956)
chr5 (213-246)||(35463979-35464012)
chr5 (225-264)||(39063136-39063175)
chr5 (26-68)||(18542227-18542269)
chr5 (218-287)||(8850303-8850372)
chr5 (218-287)||(12645388-12645457)
chr5 (218-287)||(27895936-27896005)
chr5 (213-246)||(28499808-28499841)
chr5 (250-298)||(28351008-28351056)
[»] chr1 (17 HSPs)
chr1 (219-299)||(29853196-29853276)
chr1 (221-295)||(1442067-1442141)
chr1 (218-274)||(15497534-15497588)
chr1 (215-262)||(44661795-44661842)
chr1 (218-299)||(10325316-10325396)
chr1 (226-299)||(27634299-27634371)
chr1 (218-271)||(47154705-47154758)
chr1 (218-270)||(11016646-11016698)
chr1 (213-256)||(47084635-47084678)
chr1 (212-246)||(882951-882985)
chr1 (218-287)||(457612-457681)
chr1 (213-246)||(1226741-1226774)
chr1 (216-297)||(4540650-4540731)
chr1 (218-287)||(30412628-30412697)
chr1 (218-287)||(47911881-47911950)
chr1 (216-280)||(1442079-1442143)
chr1 (219-247)||(5091750-5091778)
[»] chr7 (15 HSPs)
chr7 (218-298)||(29229701-29229781)
chr7 (218-287)||(12423685-12423754)
chr7 (226-298)||(39751093-39751165)
chr7 (214-288)||(34427545-34427619)
chr7 (217-273)||(24283094-24283150)
chr7 (218-260)||(35985291-35985333)
chr7 (218-260)||(36006699-36006741)
chr7 (213-273)||(25778359-25778419)
chr7 (215-256)||(15996144-15996185)
chr7 (218-287)||(35274452-35274521)
chr7 (221-274)||(42927019-42927072)
chr7 (217-249)||(30322794-30322826)
chr7 (214-246)||(31903035-31903067)
chr7 (218-298)||(35985288-35985368)
chr7 (218-298)||(36006696-36006776)
[»] chr4 (7 HSPs)
chr4 (218-297)||(7277448-7277527)
chr4 (215-299)||(10304684-10304768)
chr4 (218-272)||(24099596-24099650)
chr4 (23-68)||(20742367-20742412)
chr4 (26-67)||(43061690-43061731)
chr4 (214-287)||(48601135-48601208)
chr4 (218-298)||(7277445-7277525)
[»] chr2 (12 HSPs)
chr2 (218-260)||(644097-644139)
chr2 (216-275)||(1220808-1220867)
chr2 (226-277)||(32965699-32965750)
chr2 (213-286)||(11030431-11030504)
chr2 (218-293)||(30429100-30429175)
chr2 (213-246)||(27279513-27279546)
chr2 (226-295)||(41221669-41221738)
chr2 (215-246)||(9733547-9733578)
chr2 (215-299)||(472439-472524)
chr2 (213-246)||(7645541-7645574)
chr2 (213-246)||(41221710-41221743)
chr2 (214-246)||(25997344-25997376)
[»] chr3 (11 HSPs)
chr3 (215-287)||(11534795-11534867)
chr3 (213-280)||(25108954-25109020)
chr3 (219-285)||(41288138-41288204)
chr3 (32-67)||(15802352-15802387)
chr3 (217-287)||(45799938-45800008)
chr3 (215-246)||(55121202-55121233)
chr3 (226-287)||(11534795-11534856)
chr3 (215-264)||(26331246-26331295)
chr3 (26-70)||(26073227-26073271)
chr3 (218-297)||(32711237-32711317)
chr3 (218-297)||(42896175-42896255)
[»] chr8 (6 HSPs)
chr8 (214-274)||(14578530-14578590)
chr8 (218-298)||(18147839-18147920)
chr8 (32-67)||(11556961-11556996)
chr8 (235-298)||(37990336-37990399)
chr8 (2-68)||(23559640-23559706)
chr8 (218-246)||(18147842-18147870)
[»] scaffold0001 (1 HSPs)
scaffold0001 (26-67)||(398638-398679)
[»] scaffold0003 (1 HSPs)
scaffold0003 (215-298)||(320699-320783)


Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 2 - 525
Target Start/End: Original strand, 3846235 - 3846771
Alignment:
Q  2 cacgacatttactataacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaattaaatgcatcagtgccttgtcaggggtatgcac 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3846235 cacgacatttactatgacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaattaaatgcatcagtgccttgtcaggggtatgcac 3846334  T
Q  102 caacatgtgtcggacaccagttttcaatctaaagtgtcaatacaacatccaggctatgaagcattgacacatacacgagcatcgaacaaactacttcctc 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||     
T  3846335 caacatgtgtcagacaccagttttcaatctaaagtgtcaatacaacatccaggctatgaagcattgacacatacatgaacatcgaacaaactactccctt 3846434  T
Q  202 cggtcacatttataa-----------ttttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaactt 290  Q
    |||||||||||||||           ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3846435 cggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtatatgacctatatatagaccggatacattagatattaaatgaactt 3846534  T
Q  291 aaaaagttannnnnnngcttataaatgtgaccatatagagtatgaagcattggcacattcgcggacattgaacacgacagagacaatgacacatat--at 388  Q
    |||||||||       ||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||    
T  3846535 aaaaagttatttttttgcttataaatgcgaccagagagagtatgaagcattgacacattcgcggacattgaacacgacagagacaatgacacatatatat 3846634  T
Q  389 tagtaataattaaaggaaaatgtgattgaatgtaaccacatgcatcagcatcggcatcgtgtagtgtcagacacacagacatatcacataccggacatgc 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3846635 tagtaataattaaaggaaaatgtgattgaatgtaaccacatgcatcagcatcggcatcgtgtagtgtcagacacacagacatatcacataccggacatgc 3846734  T
Q  489 attcaatctaaagtcaatcacatgcctaggcatcggc 525  Q
    |||||||||||||||||||||||||||||||||||||    
T  3846735 attcaatctaaagtcaatcacatgcctaggcatcggc 3846771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 500
Target Start/End: Original strand, 3846780 - 3846829
Alignment:
Q  451 agtgtcagacacacagacatatcacataccggacatgcattcaatctaaa 500  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  3846780 agtgtcagactcacaggcatatcacataccggacatgcattcaatctaaa 3846829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 20703431 - 20703506
Alignment:
Q  214 taattttttaggttcattgaataactaatgtatatgacctat-atatagaccggatacattagatattaaatgaac 288  Q
    |||||||||||||||||||||||  |||||||| ||  |||| |||||||||  |||||||| ||||| |||||||    
T  20703431 taattttttaggttcattgaatatttaatgtatttggtctataatatagaccaaatacattaaatattcaatgaac 20703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 2271239 - 2271153
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    |||| ||||||| ||||||||| ||||||||||| |||| ||||||| ||||  ||| ||||  |||| ||| ||||| ||||||||    
T  2271239 ataactttttagattcattgaacaactaatgtatttgacatatatattgacccaatagattacttattcaataaactttaaaagtta 2271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 16829313 - 16829229
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||| ||  ||||||||||||||| ||||||||||||||||||    
T  16829313 aattttttaggttcatcgaataactaatgtatctgacctttatataaactagatacattagatattcaatgaacttaaaaagtta 16829229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 35464061 - 35463984
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 295  Q
    ||||||||||| |||| || ||||||||| | || ||||||||||||||||||||||| |||| ||||||| ||||||    
T  35464061 tttttaggttctttgagtagctaatgtatctaacatatatatagaccggatacattagttattcaatgaacctaaaaa 35463984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 11417500 - 11417418
Alignment:
Q  214 taattttttaggttcattgaataactaatgtatatgacctatatata-gaccggatacattagatattaaatgaacttaaaaa 295  Q
    |||||||||||||||||||||| |||||||||||||  ||||| ||| |||| ||| || ||  |||| ||||||||||||||    
T  11417500 taattttttaggttcattgaatgactaatgtatatggtctataaatatgaccagattcaataattattcaatgaacttaaaaa 11417418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 30908956 - 30908911
Alignment:
Q  250 acctatatatagaccggatacattagatattaaatgaacttaaaaa 295  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||    
T  30908956 acctatatatagaccgaatacattatttattaaatgaacttaaaaa 30908911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 35463979 - 35464012
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtat 246  Q
    ||||||||||||||||||||||||||||||||||    
T  35463979 ataattttttaggttcattgaataactaatgtat 35464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 39063136 - 39063175
Alignment:
Q  225 gttcattgaataactaatgtatatgacctatatatagacc 264  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  39063136 gttcattgtataactaatgtatgtgacctatatatagacc 39063175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 18542269 - 18542227
Alignment:
Q  26 acacaagtaataatttgagaaaatttaagtaattgaatgtaat 68  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  18542269 acaccagtaataatttgagaaaatacaagtaattgaatgtaat 18542227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 8850372 - 8850303
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||||||||  |||||||| ||  |||||||| ||||  |||||||| ||||| ||||||    
T  8850372 tttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaa 8850303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 12645457 - 12645388
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||| ||||||||||||  |||||||| ||  ||||||||| |||| |||||||| ||||| ||||||    
T  12645457 tttttaagttcattgaatacataatgtatttggtctatatataaaccgaatacattaaatattgaatgaa 12645388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 27896005 - 27895936
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||   |||||| |  |||||||||||    
T  27896005 tttttaggttcatttaataaatgatgtatgtgacctatatatagactacatacatcatttattaaatgaa 27895936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 28499808 - 28499841
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtat 246  Q
    |||||||||||| |||||||||||||||||||||    
T  28499808 ataattttttagattcattgaataactaatgtat 28499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 28351008 - 28351056
Alignment:
Q  250 acctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    ||||||| |||||||||||||||||| |||| ||||||  |||||||||    
T  28351008 acctataaatagaccggatacattagttattcaatgaatctaaaaagtt 28351056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 29853196 - 29853276
Alignment:
Q  219 ttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    ||||||||||||| |||||||||||||| |||| |||||||||| || ||||||||  |||||||||||| ||||||||||    
T  29853196 ttttaggttcattcaataactaatgtatctgacttatatatagatcgaatacattatttattaaatgaacataaaaagtta 29853276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 1442067 - 1442141
Alignment:
Q  221 ttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 295  Q
    ||||||| |||||||||||||||||| ||| ||||||||||  |||||| ||||  |||| ||||||||||||||    
T  1442067 ttaggtttattgaataactaatgtatctgatctatatataggtcggatatattaattatttaatgaacttaaaaa 1442141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 15497588 - 15497534
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacatta 274  Q
    |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||    
T  15497588 tttttagactcattgaataactaatgtatatgac--atatatagaccggatacatta 15497534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 44661795 - 44661842
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctatatataga 262  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||    
T  44661795 aattttttaagttcattgaataactaatgtatcttacctatatataga 44661842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 10325316 - 10325396
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    |||||||||||||||||||||| |||||| ||  |||||| || ||| |||||||||| |||| ||||||  ||||||||||    
T  10325316 tttttaggttcattgaataacttatgtatttgctctatat-tacaccagatacattagttatttaatgaatataaaaagtta 10325396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 27634371 - 27634299
Alignment:
Q  226 ttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    ||||||||||||||||| ||| ||||  |||||| |||||| ||||||||||||| ||| ||| ||||||||||    
T  27634371 ttcattgaataactaatctatttgactaatatattgaccgg-tacattagatattcaattaacctaaaaagtta 27634299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 47154758 - 47154705
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggataca 271  Q
    |||||||||||||| ||||| |||||||| || ||||||||||||| |||||||    
T  47154758 tttttaggttcatttaataaataatgtatctggcctatatatagactggataca 47154705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 11016698 - 11016646
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatac 270  Q
    |||||||||| |||||||||||||||||||||| |  |||||||||| |||||    
T  11016698 tttttaggtttattgaataactaatgtatatgatcattatatagaccagatac 11016646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 47084678 - 47084635
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtatatgacctata 256  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||    
T  47084678 ataattttttaggttcatagaataactaatgtatttgatctata 47084635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 882951 - 882985
Alignment:
Q  212 tataattttttaggttcattgaataactaatgtat 246  Q
    ||||| |||||||||||||||||||||||||||||    
T  882951 tataactttttaggttcattgaataactaatgtat 882985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 457681 - 457612
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||||||||  |||||||| ||  |||||||| ||||  |||||||| ||||| ||||||    
T  457681 tttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaa 457612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 1226774 - 1226741
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtat 246  Q
    ||||||||||| ||||||||||||||||||||||    
T  1226774 ataattttttaagttcattgaataactaatgtat 1226741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 4540731 - 4540650
Alignment:
Q  216 attttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagt 297  Q
    ||||||||| |||||| ||||  |||||||| ||  | |||||||||||| |||||||| ||||| ||||||| || |||||    
T  4540731 attttttagattcattcaatacttaatgtatttggtcaatatatagaccgaatacattatatattcaatgaacctataaagt 4540650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 30412628 - 30412697
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||||||||  |||||||| ||  |||||||| ||||  |||||||| ||||| ||||||    
T  30412628 tttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaa 30412697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 47911881 - 47911950
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||||||||  |||||||| ||  |||||||| ||||  |||||||| ||||| ||||||    
T  47911881 tttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaa 47911950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 1442143 - 1442079
Alignment:
Q  216 attttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatatt 280  Q
    |||||||| ||||||| ||||| |||| |||  |||||||||||||| | |||||||||| ||||    
T  1442143 attttttaagttcattaaataattaatatatccgacctatatatagatcagatacattagttatt 1442079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 5091778 - 5091750
Alignment:
Q  219 ttttaggttcattgaataactaatgtata 247  Q
    |||||||||||||||||||||||||||||    
T  5091778 ttttaggttcattgaataactaatgtata 5091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 29229781 - 29229701
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  || |||||| | || ||||||  |||||||||    
T  29229781 tttttaggttcattgaataactaatgtatctgacctatatatagaccaaatgcattagttgtttaatgaatctaaaaagtt 29229701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 12423754 - 12423685
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||  |||| ||||||||| ||||||    
T  12423754 tttttaggttcattgaatacataatgtatttgacctatatatagaccaaatacgttagatattgaatgaa 12423685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 39751165 - 39751093
Alignment:
Q  226 ttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    ||||||||||||||||||||| | ||| |||||||||||  |||||||||||||| ||||||  |||||||||    
T  39751165 ttcattgaataactaatgtattttaccaatatatagaccatatacattagatatttaatgaatctaaaaagtt 39751093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 34427619 - 34427545
Alignment:
Q  214 taattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaac 288  Q
    |||||||||| ||||||| |||||||||| ||| |||||||||||||||| | ||||||||  |||| |||||||    
T  34427619 taattttttaagttcattcaataactaatatatctgacctatatatagactgaatacattatttattgaatgaac 34427545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 24283094 - 24283150
Alignment:
Q  217 ttttttaggttcattgaataactaatgtatatgacctatatatagaccggatacatt 273  Q
    |||||||  ||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  24283094 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacatt 24283150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 35985291 - 35985333
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatata 260  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  35985291 tttttagattaattgaataactaatgtatatgacctatatata 35985333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 36006699 - 36006741
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatata 260  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  36006699 tttttagattaattgaataactaatgtatatgacctatatata 36006741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 25778419 - 25778359
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacatt 273  Q
    |||||||||| | || |||||| ||||||||||| ||||||||||||||||  ||||||||    
T  25778419 ataattttttcgatttattgaacaactaatgtatctgacctatatatagacacgatacatt 25778359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 15996144 - 15996185
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctata 256  Q
    |||||||||||| |||||||||| |||||||| |||||||||    
T  15996144 aattttttaggtacattgaataattaatgtatctgacctata 15996185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 35274521 - 35274452
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||||||||||||  |||||||| ||  |||||||| ||||  |||||||| ||||| ||||||    
T  35274521 tttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaa 35274452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 42927019 - 42927072
Alignment:
Q  221 ttaggttcattgaataactaatgtatatgacctatatatagaccggatacatta 274  Q
    |||| ||||||||||||||||||||| ||| ||||||||| | || ||||||||    
T  42927019 ttagattcattgaataactaatgtatttgatctatatataaatcgaatacatta 42927072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 30322826 - 30322794
Alignment:
Q  217 ttttttaggttcattgaataactaatgtatatg 249  Q
    ||||||||||||||||||||| |||||||||||    
T  30322826 ttttttaggttcattgaataattaatgtatatg 30322794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 31903067 - 31903035
Alignment:
Q  214 taattttttaggttcattgaataactaatgtat 246  Q
    |||||||||||||||||||||||| ||||||||    
T  31903067 taattttttaggttcattgaataattaatgtat 31903035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 35985368 - 35985288
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    ||||||| || |||||||||||||||||| |||| |||||||||  |  ||||||||| |||| ||| ||  |||||||||    
T  35985368 tttttagattaattgaataactaatgtatttgacttatatataggtcatatacattagttattcaattaatctaaaaagtt 35985288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 36006776 - 36006696
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    ||||||| || |||||||||||||||||| |||| |||||||||  |  ||||||||| |||| ||| ||  |||||||||    
T  36006776 tttttagattaattgaataactaatgtatttgacttatatataggtcatatacattagttattcaattaatctaaaaagtt 36006696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 7277448 - 7277527
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagt 297  Q
    ||||||||||||||||||||||||||||| |||| | |||||||| | ||||||| || |||| ||| ||||||||||||    
T  7277448 tttttaggttcattgaataactaatgtatctgacttttatatagatcagatacatgagttattcaataaacttaaaaagt 7277527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 10304768 - 10304684
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    |||||||||  |||||| |||||||||||||||||||| ||||||||||||| | |||| | |||| ||||||| | ||||||||    
T  10304768 aattttttaaattcattaaataactaatgtatatgaccgatatatagaccggcttcattggttatttaatgaacatgaaaagtta 10304684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 24099650 - 24099596
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacat 272  Q
    ||||||||||||| |||||| |||| ||| ||||||||||||||||| |||||||    
T  24099650 tttttaggttcatcgaataaataatatatttgacctatatatagacctgatacat 24099596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 20742367 - 20742412
Alignment:
Q  23 taaacacaagtaataatttgagaaaatttaagtaattgaatgtaat 68  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||    
T  20742367 taaacaccagtaataatttgagaaaatgcaagtaattgaatgtaat 20742412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 43061731 - 43061690
Alignment:
Q  26 acacaagtaataatttgagaaaatttaagtaattgaatgtaa 67  Q
    |||| ||||||||||||||||||| ||| |||||||||||||    
T  43061731 acactagtaataatttgagaaaatataaataattgaatgtaa 43061690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 48601135 - 48601208
Alignment:
Q  214 taattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    ||||||||||  || |||||||||||||||||| |||||||||| || | || ||| ||||| |||| ||||||    
T  48601135 taattttttatatttattgaataactaatgtatctgacctatatgtaaatcgaataaattagttattcaatgaa 48601208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 7277525 - 7277445
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    |||||| ||| ||||||||||| |||||| ||| ||||||| |   | |||||||||| |||| ||||||| |||||||||    
T  7277525 tttttaagtttattgaataactcatgtatctgatctatataaaagtcagatacattagttattcaatgaacctaaaaagtt 7277445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 644139 - 644097
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatata 260  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  644139 tttttaggttcattgaataactaatgtatatgacctatatata 644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 1220808 - 1220867
Alignment:
Q  216 attttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattag 275  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  1220808 attttgtagattcattgaataactaatgtatttgacctatatatagaccgaataaattag 1220867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 32965750 - 32965699
Alignment:
Q  226 ttcattgaataactaatgtatatgacctatatatagaccggatacattagat 277  Q
    ||||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  32965750 ttcattgaataactaatgtatttggcctatatatagaccggatacaatagat 32965699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 11030431 - 11030504
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatga 286  Q
    ||||| ||||||||||||||||| |||||||||| |||   ||||||||| ||||||||||| ||||| |||||    
T  11030431 ataatattttaggttcattgaatgactaatgtatttgataaatatatagatcggatacattaaatattcaatga 11030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 30429100 - 30429175
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaa 293  Q
    |||||||||||||| ||||| |||||||| |||||| |||||||||  |||||||||| |||| ||| ||| ||||    
T  30429100 tttttaggttcattcaataattaatgtatctgacctttatatagactagatacattagttattcaataaacctaaa 30429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 27279513 - 27279546
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtat 246  Q
    ||||||||||||||||||||||||||||||||||    
T  27279513 ataattttttaggttcattgaataactaatgtat 27279546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 41221669 - 41221738
Alignment:
Q  226 ttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 295  Q
    |||||| ||||| |||||||| |||| |  |||||||||||||||||||| |||| ||||||| ||||||    
T  41221669 ttcatttaataattaatgtatctgactttcatatagaccggatacattagttattcaatgaacctaaaaa 41221738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 9733578 - 9733547
Alignment:
Q  215 aattttttaggttcattgaataactaatgtat 246  Q
    ||||||||||||||||||||||||||||||||    
T  9733578 aattttttaggttcattgaataactaatgtat 9733547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 472524 - 472439
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctatatata-gaccggatacattagatattaaatgaacttaaaaagtta 299  Q
    ||||||||||||| |||||||||||||| ||| ||  ||||| ||| ||||  ||||||||| |||| ||| ||| ||||||||||    
T  472524 aattttttaggttaattgaataactaatatatttggtctataaatatgaccaaatacattagttattcaataaacctaaaaagtta 472439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 7645574 - 7645541
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtat 246  Q
    ||||||||||||||||||| ||||||||||||||    
T  7645574 ataattttttaggttcattaaataactaatgtat 7645541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 41221743 - 41221710
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtat 246  Q
    |||| |||||||||||||||||||||||||||||    
T  41221743 ataaatttttaggttcattgaataactaatgtat 41221710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 25997344 - 25997376
Alignment:
Q  214 taattttttaggttcattgaataactaatgtat 246  Q
    |||||||||| ||||||||||||||||||||||    
T  25997344 taattttttatgttcattgaataactaatgtat 25997376  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 11534867 - 11534795
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||||| |||||||||||  |||||||| |||||||||||||||||  ||||||||| |||| ||||||    
T  11534867 aattttttagattcattgaatatttaatgtatctgacctatatatagaccatatacattaggtattcaatgaa 11534795  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 25109020 - 25108954
Alignment:
Q  213 ataattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatatt 280  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||| ||||    
T  25109020 ataattttttatgttcattgaataactaatgtatatg-cctttatatataccgtatacattagttatt 25108954  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 41288204 - 41288138
Alignment:
Q  219 ttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatg 285  Q
    |||||||||| |||| || ||||||||| |||| ||||||||||||  |||||||||||||||||||    
T  41288204 ttttaggttcgttgattacctaatgtatttgacttatatatagaccaaatacattagatattaaatg 41288138  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 15802352 - 15802387
Alignment:
Q  32 gtaataatttgagaaaatttaagtaattgaatgtaa 67  Q
    ||||||||||||||||||||||||||||||||||||    
T  15802352 gtaataatttgagaaaatttaagtaattgaatgtaa 15802387  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 45800008 - 45799938
Alignment:
Q  217 ttttttaggttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    |||||||| |||||||||||  |||||||| ||| |||||| ||||||  ||||||||||||| |||||||    
T  45800008 ttttttagattcattgaatacataatgtatttgatctatatgtagaccaaatacattagatataaaatgaa 45799938  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 55121202 - 55121233
Alignment:
Q  215 aattttttaggttcattgaataactaatgtat 246  Q
    ||||||||||||||||||||||||||||||||    
T  55121202 aattttttaggttcattgaataactaatgtat 55121233  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 11534795 - 11534856
Alignment:
Q  226 ttcattgaataactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 287  Q
    ||||||||||| ||||||||||||  ||||||||||  | ||||||||| ||||| ||||||    
T  11534795 ttcattgaatacctaatgtatatggtctatatataggtcagatacattaaatattcaatgaa 11534856  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 26331246 - 26331295
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatgacctatatatagacc 264  Q
    |||||| |||||||||||||| |||||||||| ||  |||||||||||||    
T  26331246 aattttctaggttcattgaatgactaatgtatctggtctatatatagacc 26331295  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 26073227 - 26073271
Alignment:
Q  26 acacaagtaataatttgagaaaatttaagtaattgaatgtaatta 70  Q
    |||||||||||||||| ||||| |  |||||||||||||||||||    
T  26073227 acacaagtaataatttaagaaagtagaagtaattgaatgtaatta 26073271  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 32711237 - 32711317
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctata-tatagaccggatacattagatattaaatgaacttaaaaagt 297  Q
    |||||||||||||||||||| | |||||| || |||||| |||||||| ||||||| |  |||| ||||||  ||||||||    
T  32711237 tttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaagt 32711317  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 42896255 - 42896175
Alignment:
Q  218 tttttaggttcattgaataactaatgtatat-gacctatatatagaccggatacattagatattaaatgaacttaaaaagt 297  Q
    |||||| ||||||||||||||| |||||||| | |||   |||||||| ||||||| || |||| ||||||| ||||||||    
T  42896255 tttttacgttcattgaataactgatgtatatggtccttattatagaccagatacatcagttattcaatgaacctaaaaagt 42896175  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 14578530 - 14578590
Alignment:
Q  214 taattttttaggttcattgaataactaatgtatatgacctatatatagaccggatacatta 274  Q
    |||| ||||||||||||||||||| |||||||| ||| ||||||||||||| |||| ||||    
T  14578530 taatattttaggttcattgaataattaatgtatctgatctatatatagacccgatatatta 14578590  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 18147920 - 18147839
Alignment:
Q  218 tttttaggttcattgaataactaatgtatatgacctatatata-gaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    |||||||||  ||||||||||| |||||| |||||||||  || ||| ||||||||||| |||| ||||||| |||||||||    
T  18147920 tttttaggtatattgaataactcatgtatctgacctataattatgactggatacattagttattcaatgaacctaaaaagtt 18147839  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 11556996 - 11556961
Alignment:
Q  32 gtaataatttgagaaaatttaagtaattgaatgtaa 67  Q
    |||||||||||||||||||||||| |||||||||||    
T  11556996 gtaataatttgagaaaatttaagtgattgaatgtaa 11556961  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 37990336 - 37990399
Alignment:
Q  235 taactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    |||||||||||| |||| ||||||||||  | ||| |||||||||| |||||| ||||||||||    
T  37990336 taactaatgtatttgacttatatatagatagaatatattagatatttaatgaatttaaaaagtt 37990399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 23559640 - 23559706
Alignment:
Q  2 cacgacatttactataacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaat 68  Q
    ||||||| | ||||||||||||| |||  ||||||||||| | |||||| |||| ||||||||||||    
T  23559640 cacgacagtgactataacacatagacatcagtaataatttcaaaaaattgaagtgattgaatgtaat 23559706  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 18147842 - 18147870
Alignment:
Q  218 tttttaggttcattgaataactaatgtat 246  Q
    |||||||||||||||||||||||||||||    
T  18147842 tttttaggttcattgaataactaatgtat 18147870  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 398638 - 398679
Alignment:
Q  26 acacaagtaataatttgagaaaatttaagtaattgaatgtaa 67  Q
    |||||| ||||||||| |||||||| ||||||||||||||||    
T  398638 acacaaataataatttaagaaaattgaagtaattgaatgtaa 398679  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 320699 - 320783
Alignment:
Q  215 aattttttaggttcattgaataactaatgtatatga-cctatatatagaccggatacattagatattaaatgaacttaaaaagtt 298  Q
    |||||||||||||  ||||||||||||||||| | | ||||| |||| ||| |||| ||||| |||| ||||||  |||||||||    
T  320699 aattttttaggtttgttgaataactaatgtatctaatcctatttataaaccagatatattagttatttaatgaatctaaaaagtt 320783  T

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