View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7146_low_8 (Length: 321)

Name: NF7146_low_8
Description: NF7146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7146_low_8
NF7146_low_8
[»] chr1 (9 HSPs)
chr1 (63-254)||(28639889-28640080)
chr1 (48-195)||(35989953-35990100)
chr1 (55-224)||(41932481-41932650)
chr1 (80-253)||(41933428-41933600)
chr1 (39-250)||(48182288-48182498)
chr1 (125-215)||(48892146-48892236)
chr1 (54-255)||(7134546-7134745)
chr1 (85-185)||(15499433-15499534)
chr1 (92-215)||(34549901-34550024)
[»] chr2 (3 HSPs)
chr2 (79-246)||(815596-815763)
chr2 (86-220)||(21649641-21649776)
chr2 (92-211)||(33945978-33946097)
[»] chr7 (8 HSPs)
chr7 (39-215)||(18500378-18500553)
chr7 (56-186)||(42012319-42012449)
chr7 (92-215)||(1906495-1906619)
chr7 (173-215)||(19646992-19647034)
chr7 (162-250)||(8920431-8920519)
chr7 (127-175)||(20171188-20171236)
chr7 (109-141)||(24450988-24451020)
chr7 (164-224)||(36279948-36280008)
[»] chr5 (10 HSPs)
chr5 (92-255)||(27690401-27690563)
chr5 (48-247)||(22417265-22417463)
chr5 (50-255)||(8840439-8840643)
chr5 (46-250)||(36520555-36520759)
chr5 (92-215)||(28443150-28443273)
chr5 (48-151)||(22407434-22407537)
chr5 (92-224)||(32285534-32285666)
chr5 (156-225)||(17476601-17476670)
chr5 (96-185)||(32695106-32695195)
chr5 (123-254)||(16490132-16490263)
[»] chr3 (3 HSPs)
chr3 (39-254)||(20860276-20860490)
chr3 (50-185)||(29582311-29582446)
chr3 (49-151)||(36337621-36337723)
[»] chr8 (4 HSPs)
chr8 (74-255)||(17865019-17865199)
chr8 (54-255)||(32124378-32124577)
chr8 (162-253)||(2287000-2287091)
chr8 (158-216)||(38621574-38621632)
[»] chr4 (4 HSPs)
chr4 (48-247)||(52598248-52598447)
chr4 (123-254)||(56084121-56084251)
chr4 (93-215)||(34953533-34953655)
chr4 (63-151)||(1655944-1656032)
[»] chr6 (3 HSPs)
chr6 (48-146)||(33555069-33555167)
chr6 (123-215)||(17519900-17519992)
chr6 (172-215)||(6837247-6837290)
[»] scaffold0185 (1 HSPs)
scaffold0185 (152-246)||(5065-5158)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 254
Target Start/End: Original strand, 28639889 - 28640080
Alignment:
Q  63 aatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaa 162  Q
    ||||||||||||| || |||||||| |||||||||||||| | | ||||||||   ||| ||||||||||||||||||| ||||||||||||||||| ||    
T  28639889 aatctgaaacctcacatactaggtgaattgtggcgtttcatctaaggtttggatggtttgtggtgtgtttaatgcatttttggtcggttggaccatgtaa 28639988  T
Q  163 aatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcacttc 254  Q
    |||||||||||||||||||||||| |||||||| |  |||||| |||||||||  |||||||| || |||| ||||||| ||||||||||||    
T  28639989 aatgtttcctttgactgtagttatagtctaggaatgatttaaggctataaatagccttgcatgcttcaacaatttcatttattcttcacttc 28640080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 35989953 - 35990100
Alignment:
Q  48 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 147  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||  ||| ||||||||||||||||||| |||||    
T  35989953 agtttcggattgtaaaatccgaaacatcccagactaggtggattgtggcgtttcacccaatgtttggacggtttgtggtgtgtttaatgcatttttggtc 35990052  T
Q  148 ggttggaccatggaaaatgtttcctttgactgtagttatggtctagga 195  Q
    ||||||||||||||||| |||| |||||||  ||||||||||||||||    
T  35990053 ggttggaccatggaaaacgttttctttgacaatagttatggtctagga 35990100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 41932481 - 41932650
Alignment:
Q  55 gattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttgga 154  Q
    ||||||| |||| |||| ||| || ||||||||||||||||||||||||| | |||| ||||  ||| ||||||||||||||||||| ||||| |||| |    
T  41932481 gattgtataatccgaaaactctcaaactaggtggattgtggcgtttcaccaaaggttgggacggtttgtggtgtgtttaatgcatttttggtcagttgaa 41932580  T
Q  155 ccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcat 224  Q
    ||||| |||||||||||||| | ||| ||||||||||  ||||  |||| |||||||||||  |||||||    
T  41932581 ccatgtaaaatgtttcctttaaatgttgttatggtctgagactgatttacgactataaataggcttgcat 41932650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 41933428 - 41933600
Alignment:
Q  80 actaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactg 179  Q
    ||||||||||||||||||||||||| | |||||||||  ||| ||||||||||||| ||||| ||||| |||| |||||| |||||||||||||| | ||    
T  41933428 actaggtggattgtggcgtttcaccaaaggtttggacggtttgtggtgtgtttaatccatttttggtccgttgaaccatgtaaaatgtttcctttaaatg 41933527  T
Q  180 tagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 253  Q
    | |||||||| | |||||  |||| |||||||||||  |||||||  || || | || ||||||||||||||||    
T  41933528 ttgttatggtatgggactgatttacgactataaataggcttgcat-cttcaaaaattccattcattcttcactt 41933600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 48182288 - 48182498
Alignment:
Q  39 tattcagacagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgca 138  Q
    |||| ||||||||||||||| |  ||| |||||| |||| ||||  ||||| |||| | ||||||||| |||||| ||  ||| |||||||||||||| |    
T  48182288 tatttagacagtttcagattatgtaatttgaaacatcccggactgtgtggactgtgacatttcacccaaggtttg-actgtttgtggtgtgtttaatgta 48182386  T
Q  139 tttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttc 238  Q
    ||| |||||||||||| ||| ||||| |||   ||||| |||| |||  ||||||||   |||||||  | |||||| | ||||||| || |||| ||||    
T  48182387 tttttggtcggttggagcattgaaaacgttatgtttgattgtatttacagtctaggataggtttaaggttttaaatagttttgcatgcttcaacaatttc 48182486  T
Q  239 attcattcttca 250  Q
    ||||||||||||    
T  48182487 attcattcttca 48182498  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 48892236 - 48892146
Alignment:
Q  125 gtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaata 215  Q
    ||||||||||||||||| ||| |||||||  ||||||||| || || |||||||||||||||| |||| |||| |||||||  ||||||||    
T  48892236 gtgtgtttaatgcatttttggacggttggggcatggaaaacgtatcatttgactgtagttatgatctatgacttgtttaaggttataaata 48892146  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 7134745 - 7134546
Alignment:
Q  54 agattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttgg 153  Q
    |||||||| |||||||||||||||||| |||||| | ||||| |||||||||| |||||  ||   || ||  ||||||||||  ||| || ||| ||||    
T  7134745 agattgtagaatctgaaacctcccagattaggtgaaatgtggtgtttcacccaaggtttaaacggattgtg--gtgtttaatgtgtttttgatcgtttgg 7134648  T
Q  154 accatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 253  Q
    | ||  ||||| ||||| ||| |||||||||||| |||| || |   ||||   ||||||||   ||||||| || |||| |||||||||||||||||||    
T  7134647 agcaatgaaaacgtttcatttaactgtagttatgatctacgaatgtattaaagttataaatagcattgcatgcttcaacaatttcattcattcttcactt 7134548  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 15499534 - 15499433
Alignment:
Q  85 gtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatg-catttatggtcggttggaccatggaaaatgtttcctttgactgtagt 183  Q
    ||||||||||||||| |||| |  | ||||||  |||||||||||||||||| | ||| ||||||||| |   |||| ||||||||||||||| ||||||    
T  15499534 gtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttggaaatggtaaatgtttcctttgattgtagt 15499435  T
Q  184 ta 185  Q
    ||    
T  15499434 ta 15499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 34550024 - 34549901
Alignment:
Q  92 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 191  Q
    ||||||||||||  | |||||||||  ||  |||||||||||||| |||| ||  ||||||||   ||||||| ||||  ||| | |||||||||| |||    
T  34550024 gtggcgtttcactaaaggtttggacggttagtggtgtgtttaatgaatttttgaacggttggatggtggaaaacgttttatttaattgtagttatgatct 34549925  T
Q  192 aggactagtttaagactataaata 215  Q
    |||||| |||| || |||||||||    
T  34549924 aggacttgttttaggctataaata 34549901  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 815763 - 815596
Alignment:
Q  79 gactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgact 178  Q
    ||||||||||| | || ||||||||| | ||||| |||  ||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |    
T  815763 gactaggtggaatatgacgtttcaccaaaggtttagacggtttgtggtgtgtttaatgcatttttggtcggttggaccatgaaaaacgtttcctttgaat 815664  T
Q  179 gtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattc 246  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||  | |||| ||||||||||||    
T  815663 gtagttatggtctaggacttgtttaagactataaataggcttgcatgcatcaacaatttcattcattc 815596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 21649641 - 21649776
Alignment:
Q  86 tggattgtggcgtttcacccatgg-tttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagtt 184  Q
    ||||| ||||||||||| |||  | |||||||  ||| |||||||||||||| |||| |||  |||||||   ||||||| | ||  |||||||||||||    
T  21649641 tggatggtggcgtttcatccaaagatttggacggtttgtggtgtgtttaatgaatttttggatggttggaaggtggaaaacgctttatttgactgtagtt 21649740  T
Q  185 atggtctaggactagtttaagactataaataatctt 220  Q
    ||  ||||||||| ||||||| ||||||||| ||||    
T  21649741 ataatctaggacttgtttaaggctataaatagtctt 21649776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 33946097 - 33945978
Alignment:
Q  92 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 191  Q
    |||||| |||||| |  |||| ||| |||| ||||| |||||| | |||| ||| ||||||||| ||||||||  |||  |||||||||||||||| |||    
T  33946097 gtggcgattcaccaaatgtttagacgatttgtggtgcgtttaaagaatttttggacggttggacaatggaaaacattttatttgactgtagttatgatct 33945998  T
Q  192 aggactagtttaagactata 211  Q
    |||||| |||| || |||||    
T  33945997 aggacttgttttaggctata 33945978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 18500553 - 18500378
Alignment:
Q  39 tattcagacagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgca 138  Q
    |||| |||||| |||| |||||| ||||||||||||| |||||||| ||||  |||  |||||||| | ||||||||| |||| ||||||||||||||||    
T  18500553 tatttagacaggttcaaattgtataatctgaaacctctcagactagttggacggtgatgtttcaccaaaggtttggacgatttgtggtgtgtttaatgca 18500454  T
Q  139 tttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaata 215  Q
    ||| |||| ||||||||||||| ||| ||||| |||||| ||||||||| ||||||||| |||||||||||| ||||    
T  18500453 tttttggt-ggttggaccatgggaaacgtttcgtttgaccgtagttatgatctaggactggtttaagactattaata 18500378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 42012449 - 42012319
Alignment:
Q  56 attgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggac 155  Q
    |||||| ||||||||| ||| || |||||||||||||||||||| |||||| |||||| |   ||||||| |||||||||| |||| ||||  |||||||    
T  42012449 attgtataatctgaaaactctcatactaggtggattgtggcgttgcacccaaggtttgaattgtttatggcgtgtttaatgtatttttggttagttggac 42012350  T
Q  156 catggaaaatgtttcctttgactgtagttat 186  Q
    ||| ||||||||||||||||||| |||||||    
T  42012349 catagaaaatgtttcctttgactatagttat 42012319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 1906495 - 1906619
Alignment:
Q  92 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaat-gtttcctttgactgtagttatggtc 190  Q
    ||||||||||| | |  ||||||||  ||| ||| ||||||||||||  | ||| || ||||||||| |||||  | ||||||||||||||||| || ||    
T  1906495 gtggcgtttcatcaaaagtttggacggtttgtggagtgtttaatgcagctttggacgattggaccatagaaaaacgcttcctttgactgtagttgtgatc 1906594  T
Q  191 taggactagtttaagactataaata 215  Q
    ||||||  |||||||||||||||||    
T  1906595 taggacatgtttaagactataaata 1906619  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 19647034 - 19646992
Alignment:
Q  173 ttgactgtagttatggtctaggactagtttaagactataaata 215  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||    
T  19647034 ttgactgtaattatgatctaggactggtttaagactataaata 19646992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 8920519 - 8920431
Alignment:
Q  162 aaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttca 250  Q
    ||||||||||||||||| ||||||   |||||||  | |||| ||||||||||| ||||||||| || || |  ||||||| |||||||    
T  8920519 aaatgtttcctttgactatagttacaatctaggataaatttatgactataaatagtcttgcatgcttcaatatattcattcgttcttca 8920431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 20171236 - 20171188
Alignment:
Q  127 gtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttg 175  Q
    |||||| |||||||| ||| |||||||||||||||||| | ||||||||    
T  20171236 gtgtttgatgcatttttgggcggttggaccatggaaaacgcttcctttg 20171188  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 24450988 - 24451020
Alignment:
Q  109 gtttggacaatttatggtgtgtttaatgcattt 141  Q
    ||||||| |||||||||||||||||||||||||    
T  24450988 gtttggaaaatttatggtgtgtttaatgcattt 24451020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 36280008 - 36279948
Alignment:
Q  164 atgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcat 224  Q
    |||||||||||||||| |||||| ||||||||    |||| ||||||||||| ||||||||    
T  36280008 atgtttcctttgactgcagttatagtctaggaacgttttatgactataaatagtcttgcat 36279948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 27690401 - 27690563
Alignment:
Q  92 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 191  Q
    ||||||||||| | | |||||||||  ||| ||  ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  27690401 gtggcgtttcatcaaaggtttggacggtttgtgaagtgtttaatgcatttttggtcggttggaccatggaaaacgcttcctttgactgtagttatggtct 27690500  T
Q  192 aggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcacttcc 255  Q
    ||||||  |||||| |||||||||  |||||||  || |||| |||||||||||||||||||||    
T  27690501 aggactgatttaaggctataaatatgcttgcat-cttcaacaatttcattcattcttcacttcc 27690563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 247
Target Start/End: Original strand, 22417265 - 22417463
Alignment:
Q  48 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 147  Q
    ||||||| ||| || ||||||||||||||||||||  |||||||||||||||||||||| |||||| ||| ||| |||||||||||| | |||| |||||    
T  22417265 agtttcaaattatataatctgaaacctcccagactgtgtggattgtggcgtttcacccaaggtttgaacagtttgtggtgtgtttaaagtatttttggtc 22417364  T
Q  148 ggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactag-tttaagactataaataatcttgcatgattaaacagtttcattcattc 246  Q
    ||||    ||| |  |||||||||||||||||||||||  |||||||| ||| |||| || |||||||| ||||||||| || ||||  |||||| ||||    
T  22417365 ggtttatgcattg-gaatgtttcctttgactgtagttacagtctagga-tagatttacgaatataaatagtcttgcatgcttcaacaaattcattgattc 22417462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 8840643 - 8840439
Alignment:
Q  50 tttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcgg 149  Q
    |||| ||||| | |||| |||||||||||| ||| |||||  ||||||||||||||| ||||||||   ||| |||||||||||||| |||| ||||| |    
T  8840643 tttcggattgcataatccgaaacctcccaggctaagtggaacgtggcgtttcacccaaggtttggatggtttgtggtgtgtttaatgtatttttggtcag 8840544  T
Q  150 ttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtt-taagactataaataatcttgcatgattaaacagtttcattcattctt 248  Q
    ||||| ||| ||||| ||||||||||| ||||||||   ||||||||  ||| |||| ||||||||| || |||||| || |||| ||||||||||||||    
T  8840543 ttggatcat-gaaaaagtttcctttgattgtagttacaatctaggacaggttataag-ctataaatagtcctgcatgctttaacaatttcattcattctt 8840446  T
Q  249 cacttcc 255  Q
    | |||||    
T  8840445 cgcttcc 8840439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 250
Target Start/End: Original strand, 36520555 - 36520759
Alignment:
Q  46 acagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatgg 145  Q
    |||| ||| ||||||||||| |||||||||||||| || ||||| ||||| || |||| || ||||||| |  ||| |||||||||||||| | || |||    
T  36520555 acagattcggattgtaaaatatgaaacctcccagattatgtggagtgtggtgtgtcacacaaggtttgggcggtttgtggtgtgtttaatgtaattttgg 36520654  T
Q  146 tcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcatt 245  Q
      |||  || |||||||||| |||||||| |||||||||||  |||| |||| ||||||| |||||||||   ||||||| || |||| |||||||||||    
T  36520655 ctggtccgagcatggaaaatatttcctttcactgtagttataatctatgactggtttaaggctataaatagaattgcatggttcaacaatttcattcatt 36520754  T
Q  246 cttca 250  Q
     ||||    
T  36520755 tttca 36520759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 28443273 - 28443150
Alignment:
Q  92 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 191  Q
    ||||||||| ||| |  |||||||| |||| ||||||||||||||||||| |||  |||||| ||||| |||| || || |||||||||||||||| |||    
T  28443273 gtggcgtttaaccaaatgtttggacgatttgtggtgtgtttaatgcatttttggatggttgggccatgaaaaacgtatcatttgactgtagttatgatct 28443174  T
Q  192 aggactagtttaagactataaata 215  Q
    ||||   ||||||| |||||||||    
T  28443173 aggaaaggtttaaggctataaata 28443150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 22407434 - 22407537
Alignment:
Q  48 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 147  Q
    ||||||| ||| || ||||| ||||||||||||||  ||||| ||| |||||||||||| | ||| |||| ||| |||||||||||||| |||| |||||    
T  22407434 agtttcaaattatataatctaaaacctcccagactgtgtggactgtcgcgtttcacccaagatttagacagtttgtggtgtgtttaatgtatttttggtc 22407533  T
Q  148 ggtt 151  Q
    ||||    
T  22407534 ggtt 22407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 224
Target Start/End: Complemental strand, 32285666 - 32285534
Alignment:
Q  92 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 191  Q
    ||||||||||||| |   |||||||  ||| |||||||||||||| ||||  ||   ||||| || ||||||| | |||||||||||||||||||| |||    
T  32285666 gtggcgtttcaccaaaaatttggacggtttgtggtgtgtttaatgtattttgggatagttgggccttggaaaacgcttcctttgactgtagttatgatct 32285567  T
Q  192 aggactagtttaagactataaataatcttgcat 224  Q
    ||||   ||||||| |||||||||  |||||||    
T  32285566 aggatatgtttaaggctataaatagacttgcat 32285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 17476670 - 17476601
Alignment:
Q  156 catggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatg 225  Q
    ||||| ||||||||||||||| |||||||| |||||| ||  |||||| | ||||||||||| |||||||    
T  17476670 catggtaaatgtttcctttgattgtagttacggtctatgataagtttatggctataaataattttgcatg 17476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 32695195 - 32695106
Alignment:
Q  96 cgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagtta 185  Q
    ||||||||| |  ||||||||  ||| |||||| |||||||||||| ||| ||||||| ||||| |||| | ||||||||| ||||||||    
T  32695195 cgtttcaccaaaagtttggacggtttgtggtgtatttaatgcatttttggacggttgggccatgtaaaacgcttcctttgattgtagtta 32695106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 16490132 - 16490263
Alignment:
Q  123 tggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgc 222  Q
    |||||||||||||| |||| |||||||||    ||| | ||| || |||||||| ||||||||  ||||||||  | |||| | ||||||||| ||||||    
T  16490132 tggtgtgtttaatgtatttttggtcggtttaggcatcgtaaacgtatcctttgaatgtagttacagtctaggataattttatggctataaatagtcttgc 16490231  T
Q  223 atgattaaacagtttcattcattcttcacttc 254  Q
    ||| |  ||||  || ||||||||||||||||    
T  16490232 atgttataacatattaattcattcttcacttc 16490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 254
Target Start/End: Original strand, 20860276 - 20860490
Alignment:
Q  39 tattcagacagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgca 138  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| | | ||| ||| |||||||||| |    
T  20860276 tatttagagagtttcatattgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaatagtttgtgg-gtgtttaatgta 20860374  T
Q  139 tttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttc 238  Q
    ||| || ||||||||| |||| |||||||||| ||| | ||||||||  | |||||||  ||||||| |||||||||  ||| |||| || |||| ||||    
T  20860375 tttttgatcggttggagcatgaaaaatgtttcatttcattgtagttagagcctaggacaggtttaaggctataaatagccttacatgcttcaacaatttc 20860474  T
Q  239 attcattcttcacttc 254  Q
    |||||||| |||||||    
T  20860475 attcattcatcacttc 20860490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 29582446 - 29582311
Alignment:
Q  50 tttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcgg 149  Q
    |||| |||| || ||||| |||||||| |||||  ||| | |||||||||||||||| ||||||||  |||| |||||||||||||||||||  ||||||    
T  29582446 tttcggattatataatctaaaacctcctagactgtgtgaagtgtggcgtttcacccaaggtttggatgatttgtggtgtgtttaatgcattttcggtcgg 29582347  T
Q  150 ttggaccatggaaaatgtttcctttgactgtagtta 185  Q
    ||||| ||| | ||||||||||||| ||||||||||    
T  29582346 ttggaacattgtaaatgtttccttttactgtagtta 29582311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 36337723 - 36337621
Alignment:
Q  49 gtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcg 148  Q
    |||||||||| || |||||||||||||| |||||   |||| |||| | || ||||||  ||||||||  ||| ||||||||||||||||||| | ||||    
T  36337723 gtttcagattatataatctgaaacctcctagactgcatggaatgtgacattacacccaaagtttggacggtttgtggtgtgtttaatgcatttttagtcg 36337624  T
Q  149 gtt 151  Q
    |||    
T  36337623 gtt 36337621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 17865019 - 17865199
Alignment:
Q  74 tcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctt 173  Q
    ||||||||||||| || |||||| ||||||||| |||||| ||  ||| ||| ||||||||| ||||| |||| | ||| || |||||||| ||||||||    
T  17865019 tcccagactaggttgactgtggcttttcacccaaggtttgaacggtttgtggcgtgtttaattcatttttggttg-ttgaactatggaaaacgtttcctt 17865117  T
Q  174 tgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcacttcc 255  Q
    ||| ||||||||| ||||| ||||||||||||||||||||||  |||||||  || |||| ||| |||||||||| ||||||    
T  17865118 tgattgtagttatagtctatgactagtttaagactataaatagccttgcattgttcaacaattttattcattctttacttcc 17865199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 32124378 - 32124577
Alignment:
Q  54 agattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttgg 153  Q
    ||||| || ||||||||||||||||||||| ||| | | || ||||||||||| | |||||||  ||| | |||| |||||||||||| |||||||||||    
T  32124378 agattatataatctgaaacctcccagactatgtgcactatgacgtttcacccaagatttggacggttttttgtgtctttaatgcatttttggtcggttgg 32124477  T
Q  154 accatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 253  Q
    ||||||  |||  |||| ||||||| |||||||| | || |||| |||||||||| ||||||  |||||||  | ||| |  ||||||||||||||||||    
T  32124478 accatgacaaacctttcatttgactatagttatgattta-gactggtttaagactttaaataggcttgcatcgtcaaa-aaattcattcattcttcactt 32124575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 2287091 - 2287000
Alignment:
Q  162 aaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 253  Q
    ||||||||||||| ||| ||||||  ||||| ||  | |||| ||||||||||||  ||||||  ||||||| |||||||||||||||||||    
T  2287091 aaatgtttcctttaactatagttaccgtctatgaacattttatgactataaataacattgcattcttaaacattttcattcattcttcactt 2287000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 38621574 - 38621632
Alignment:
Q  158 tggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataa 216  Q
    ||||||||||||  |||||  ||||||||| ||||||||| ||||||||||||||||||    
T  38621574 tggaaaatgttttatttgatagtagttatgatctaggactcgtttaagactataaataa 38621632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 247
Target Start/End: Complemental strand, 52598447 - 52598248
Alignment:
Q  48 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 147  Q
    ||||||||||| ||  ||| ||||||| |||||||  ||||||||||||||||||||   |||||||||| ||  ||||||||| |||  |||| |||||    
T  52598447 agtttcagattatatgatcggaaaccttccagactgtgtggattgtggcgtttcaccagaggtttggacagttcgtggtgtgttcaatatatttttggtc 52598348  T
Q  148 ggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattct 247  Q
    ||||||| | | | ||| ||||| ||||||||||||||   |||||||   ||||| ||||||| ||| ||||||||| || ||||  ||||||| ||||    
T  52598347 ggttggagctttgtaaacgtttcttttgactgtagttacaatctaggataggtttatgactatacatagtcttgcatgcttcaacaaattcattctttct 52598248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 56084251 - 56084121
Alignment:
Q  123 tggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgc 222  Q
    ||||||||||||||||||| ||| | ||||| | ||||||||  |   |||||| |||||||||| ||||||||| ||||||| |||||||||  |||||    
T  56084251 tggtgtgtttaatgcatttttggactgttgggctatggaaaacatactctttgattgtagttatgatctaggacttgtttaaggctataaatatgcttgc 56084152  T
Q  223 atgattaaacagtttcattcattcttcacttc 254  Q
    || ||| ||||  |||||||||||||||||||    
T  56084151 at-attcaacaaattcattcattcttcacttc 56084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 34953533 - 34953655
Alignment:
Q  93 tggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtcta 192  Q
    |||||||||||| |||||||||||  ||  ||| ||||||||||||||| ||| ||||||||   ||||| | ||||  |||||||||||||||| ||||    
T  34953533 tggcgtttcaccaatggtttggacggttagtggagtgtttaatgcatttttggacggttggattgtggaacacgttttatttgactgtagttatgatcta 34953632  T
Q  193 ggactagtttaagactataaata 215  Q
    |||||  ||| || |||||||||    
T  34953633 ggacttattttaggctataaata 34953655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 1655944 - 1656032
Alignment:
Q  63 aatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggtt 151  Q
    |||| ||||||||| ||||||  |||| | |||| |||||  || ||||| ||| |||| |||||||||||||| ||||||||| ||||    
T  1655944 aatccgaaacctccaagactatatggactctggcatttcaatcaaggtttagacgatttgtggtgtgtttaatgaatttatggttggtt 1656032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 33555069 - 33555167
Alignment:
Q  48 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggt 146  Q
    ||||||||||| || |||| |||||||||||||||  ||||||||||||||  |||||| |||||| ||  ||| |||||| |||||||||||| ||||    
T  33555069 agtttcagattatataatccgaaacctcccagactgtgtggattgtggcgtaacacccaaggtttgaacggtttgtggtgtatttaatgcatttttggt 33555167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 17519992 - 17519900
Alignment:
Q  123 tggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaata 215  Q
    |||||||||||||| |||| |||||||||||||  || ||||| |||  |||||||||||||||| |||| |||| |||| || |||||||||    
T  17519992 tggtgtgtttaatgaatttttggtcggttggacggtgaaaaatattttatttgactgtagttatgatctatgacttgttttaggctataaata 17519900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 6837247 - 6837290
Alignment:
Q  172 tttgactgtagttatggtctaggactagtttaagactataaata 215  Q
    |||||||||||||||| |||||||||  ||||||||||||||||    
T  6837247 tttgactgtagttatgatctaggactgatttaagactataaata 6837290  T

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Target: scaffold0185 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 5158 - 5065
Alignment:
Q  152 ggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattc 246  Q
    |||| ||| |||||||||||||||| |||||||||||| || |||| |||||||  ||||||||  |||||||  |||||||  |||||||||||    
T  5158 ggactatgaaaaatgtttcctttgattgtagttatggtttatgacttgtttaaggttataaataggcttgcat-cttaaacaaattcattcattc 5065  T

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