View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7147_high_1 (Length: 549)
Name: NF7147_high_1
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 214 - 531
Target Start/End: Original strand, 43537429 - 43537754
Alignment:
| Q |
214 |
gaaaatgattggatttaccttatagnnnnnnncctcagaaaggaaaatgaggaccaaagcagaaacaggagacaggattgcttgagaagaaaatcgcggg |
313 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43537429 |
gaaaatgattggatttaccttatagtttttttcctcagaaaggaaaatgaggaccaaagcagaaacaggagacagtattgcttgagaagaaaatcgcggg |
43537528 |
T |
|
| Q |
314 |
attatatgaaaatggaatggatatataacaatcatgtggagcaaaactctatataaaggccagttaagagattagagctttatggatacaactaccaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43537529 |
attatatgaaaatggaatggatctataacaatcatgtggagcaaaactctatataaaggccagttaagaggttagagctttatggatacaactaccaaaa |
43537628 |
T |
|
| Q |
414 |
tacccttctagttgggtcc--------aatatatataattatgttatgttgtggttttgtctactcatataattgagcacgtctttgtgataagtactga |
505 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43537629 |
tacccttctagttgggtcctatatatatatatatataattatgttatgttgtggttttgtctactcatataattgagcacgtctttgtgataagtactga |
43537728 |
T |
|
| Q |
506 |
acttgcgacatgaaagatgtaattac |
531 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43537729 |
acttgcgacatgaaagatgtaattac |
43537754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 43537265 - 43537336
Alignment:
| Q |
47 |
cactgactctagttgttccgatttcgttctccataatccactttttccatcctccatgccaccccactaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43537265 |
cactgactctagttgttccgatttcgttctccataatccactttttccatcctccatgccacctcactaatt |
43537336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University