View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7147_high_12 (Length: 264)
Name: NF7147_high_12
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_high_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 6070424 - 6070669
Alignment:
| Q |
19 |
aaatctcagatgaataacatttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgt |
118 |
Q |
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| T |
6070424 |
aaatctcatttgaacaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctttgggtgt |
6070523 |
T |
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| Q |
119 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacacc |
218 |
Q |
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| T |
6070524 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacacc |
6070623 |
T |
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| Q |
219 |
aactagctcagaccaatttcttcttgtaggattatttctccctgaa |
264 |
Q |
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| T |
6070624 |
aactagctcagaccaatttcttcttgttggattatttctccctgaa |
6070669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 37 - 264
Target Start/End: Complemental strand, 6055961 - 6055749
Alignment:
| Q |
37 |
atttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaa |
136 |
Q |
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| T |
6055961 |
atttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctcttg-------aacctg--------a |
6055877 |
T |
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| Q |
137 |
aatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatt |
236 |
Q |
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| T |
6055876 |
aatagccaggtggcaccactcgaatttcaactccatgcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatt |
6055777 |
T |
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| Q |
237 |
tcttcttgtaggattatttctccctgaa |
264 |
Q |
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| T |
6055776 |
tcttcttgttggattatttctccctgaa |
6055749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 261
Target Start/End: Original strand, 6085518 - 6085742
Alignment:
| Q |
37 |
atttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaa |
136 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| | | | ||||||||||||||| |
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| T |
6085518 |
atttagttgatgaatcaaccaattattggagtcctaatgaccttattagattcatcaacatacaatcgaactctcttgaacctgaaatcagcagtaacaa |
6085617 |
T |
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| Q |
137 |
aatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatt |
236 |
Q |
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| T |
6085618 |
atgaatcagggggcaccacttgaatttcaactccagatatatcttcctttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaact |
6085717 |
T |
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| Q |
237 |
tcttcttgtaggattatttctccct |
261 |
Q |
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| T |
6085718 |
tgtttttgtagggttatttgtccct |
6085742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 6035562 - 6035477
Alignment:
| Q |
174 |
catctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctcc |
259 |
Q |
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|||||||||||||||||| |||| ||||||||| | || |||||||||||||| | |||| || || | ||||| |||||||||| |
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| T |
6035562 |
catctcttcctttatttttctctttgcttcttcaacagtgacaccaactagctctggccaacttgttttagtagggttatttctcc |
6035477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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