View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7147_high_19 (Length: 239)

Name: NF7147_high_19
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7147_high_19
NF7147_high_19
[»] chr6 (4 HSPs)
chr6 (1-224)||(8294371-8294594)
chr6 (1-224)||(33257161-33257384)
chr6 (77-205)||(845019-845147)
chr6 (77-164)||(870303-870390)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-224)||(1279-1502)
[»] chr8 (8 HSPs)
chr8 (8-221)||(906004-906217)
chr8 (1-221)||(894419-894639)
chr8 (11-221)||(548677-548887)
chr8 (11-221)||(23423717-23423927)
chr8 (8-117)||(10201827-10201936)
chr8 (8-117)||(10208900-10209009)
chr8 (77-151)||(566303-566377)
chr8 (67-116)||(560446-560495)
[»] scaffold0184 (1 HSPs)
scaffold0184 (67-205)||(15188-15326)
[»] scaffold0078 (2 HSPs)
scaffold0078 (67-205)||(57518-57656)
scaffold0078 (71-113)||(3067-3109)
[»] chr7 (3 HSPs)
chr7 (71-113)||(16566723-16566765)
chr7 (71-113)||(16598897-16598939)
chr7 (79-123)||(48398540-48398584)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8294371 - 8294594
Alignment:
Q  1 taattttgcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8294371 taattttgcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 8294470  T
Q  101 aaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8294471 aaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccatttg 8294570  T
Q  201 gtaaatactctaatggatcattgt 224  Q
    ||||||||||||||||||||||||    
T  8294571 gtaaatactctaatggatcattgt 8294594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33257384 - 33257161
Alignment:
Q  1 taattttgcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33257384 taattttgcattcattctttgctctgcaaacaatggccatgcaatcaacggaacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 33257285  T
Q  101 aaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || |||||||||||||| | |||||| ||||    
T  33257284 aaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgtaacaactaatcccttctcttttgttctttcgacaaaaccgtttg 33257185  T
Q  201 gtaaatactctaatggatcattgt 224  Q
    |||||||||||||||| |||||||    
T  33257184 gtaaatactctaatggttcattgt 33257161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 845019 - 845147
Alignment:
Q  77 gttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttctt 176  Q
    |||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |||| ||||||||||||  ||| ||||||||  || ||  |||    
T  845019 gttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaactactaaacctttccctt 845118  T
Q  177 ttgttctttccaaaaaaccttttggtaaa 205  Q
    ||||||||||||||||||| |||||||||    
T  845119 ttgttctttccaaaaaaccatttggtaaa 845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 870303 - 870390
Alignment:
Q  77 gttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactacta 164  Q
    |||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |||| ||||||||||||  ||| ||||||||    
T  870303 gttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaactacta 870390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1502 - 1279
Alignment:
Q  1 taattttgcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1502 taattttgcattcattctttgctctgcaaacaatggccatgcaatcaacggtacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 1403  T
Q  101 aaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || |||||||||||||| | |||||| ||||    
T  1402 aaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgtaacaactaatcccttctcttttgttctttcgacaaaaccgtttg 1303  T
Q  201 gtaaatactctaatggatcattgt 224  Q
    |||||||||||||||| |||||||    
T  1302 gtaaatactctaatggttcattgt 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 906217 - 906004
Alignment:
Q  8 gcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacc 107  Q
    |||||||||||||| |||||||| |  |||||||||||||  ||||| || ||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  906217 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacagtctccaaagttgaaccccaaccacaatgactcaaaaacc 906118  T
Q  108 caccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttggtaaata 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||  |||||||||| ||||| |||||||||||    
T  906117 caccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaata 906018  T
Q  208 ctctaatggatcat 221  Q
    ||||||||||||||    
T  906017 ctctaatggatcat 906004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 894419 - 894639
Alignment:
Q  1 taattttgcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgactt 100  Q
    |||||| |||||||||||||| || ||||| |  |||||||||||||  ||||| || ||||||||||||||||||||||||| |||||||||||||||     
T  894419 taatttggcattcatcctttgttcagcaaatagaggccatgcaatcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactc 894518  T
Q  101 aaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||||| |||||||||| ||||||  |||    
T  894519 aaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttggttctttccagaaaaccacttg 894618  T
Q  201 gtaaatactctaatggatcat 221  Q
    ||||||| |||||||||||||    
T  894619 gtaaataatctaatggatcat 894639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 548677 - 548887
Alignment:
Q  11 ttcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccac 110  Q
    ||||| || ||||| |||||||||||||| |||||||  ||||| || | ||| | || ||| ||| |||||||||||||||||||| | ||||| ||||    
T  548677 ttcattctctgctcagcaaacaatggccaagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccac 548776  T
Q  111 caattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttggtaaatactc 210  Q
    || |||| | ||||| |||||| ||||||||||| |||||||||| ||| || |  || |  ||||| || |||||||| ||||||  ||||||||| |     
T  548777 cagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatt 548876  T
Q  211 taatggatcat 221  Q
    |||||||||||    
T  548877 taatggatcat 548887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 23423927 - 23423717
Alignment:
Q  11 ttcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccac 110  Q
    ||||| || ||||| |||||||||||||| |||||||  ||||| || | ||| | || ||| ||| |||||||||||||||||||| | ||||| ||||    
T  23423927 ttcattctctgctcagcaaacaatggccaagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccac 23423828  T
Q  111 caattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccttttggtaaatactc 210  Q
    || |||| | ||||| |||||| ||||||||||| |||||||||| ||| || |  || |  ||||| || |||||||| ||||||  ||||||||| |     
T  23423827 cagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatt 23423728  T
Q  211 taatggatcat 221  Q
    |||||||||||    
T  23423727 taatggatcat 23423717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 10201827 - 10201936
Alignment:
Q  8 gcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacc 107  Q
    ||||||||| ||||||| ||| | | ||||||||||||||| ||||| || || ||||||||||| | ||||||| |||||||||||||||| | |||||    
T  10201827 gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaacc 10201926  T
Q  108 caccaattga 117  Q
    | ||||||||    
T  10201927 ctccaattga 10201936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 10208900 - 10209009
Alignment:
Q  8 gcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacc 107  Q
    ||||||||| ||||||| ||| | | ||||||||||||||| ||||| || || ||||||||||| | ||||||| |||||||||||||||| | |||||    
T  10208900 gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaacc 10208999  T
Q  108 caccaattga 117  Q
    | ||||||||    
T  10209000 ctccaattga 10209009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 566303 - 566377
Alignment:
Q  77 gttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccat 151  Q
    |||||| || ||||| |||||| |||||| ||| ||||||| | |||||||||||| ||||||||||||||||||    
T  566303 gttgaattcgaaccaaaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat 566377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 560446 - 560495
Alignment:
Q  67 actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattg 116  Q
    |||||||||| ||||| |||||||||||||| |||||||  |||||||||    
T  560446 actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg 560495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 15188 - 15326
Alignment:
Q  67 actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagt 166  Q
    ||||||||||  |||| |||||||||||||||||||||| ||||||| ||| | |||   ||| || |||||||| |||||||||||||| |  |  |      
T  15188 actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaa 15287  T
Q  167 ccattttcttttgttctttccaaaaaaccttttggtaaa 205  Q
    || |||||||| |||||||||||||| ||| | ||||||    
T  15288 cctttttctttggttctttccaaaaaccctataggtaaa 15326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 57656 - 57518
Alignment:
Q  67 actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagt 166  Q
    ||||||||||  |||| |||||||||||||||||||||| ||||||| ||| | |||   ||| || |||||||| |||||||||||||| |  |  |      
T  57656 actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaa 57557  T
Q  167 ccattttcttttgttctttccaaaaaaccttttggtaaa 205  Q
    || |||||||| |||||||||||||| ||| | ||||||    
T  57556 cctttttctttggttctttccaaaaaccctataggtaaa 57518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 3109 - 3067
Alignment:
Q  71 tccaaagttgaactccaaccacaatgacttaaaaacccaccaa 113  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
T  3109 tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa 3067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 16566765 - 16566723
Alignment:
Q  71 tccaaagttgaactccaaccacaatgacttaaaaacccaccaa 113  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
T  16566765 tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa 16566723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 16598897 - 16598939
Alignment:
Q  71 tccaaagttgaactccaaccacaatgacttaaaaacccaccaa 113  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
T  16598897 tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa 16598939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 48398584 - 48398540
Alignment:
Q  79 tgaactccaaccacaatgacttaaaaacccaccaattgatccatg 123  Q
    |||| |||||||||||||| |||||||||||||| |||| |||||    
T  48398584 tgaattccaaccacaatgagttaaaaacccaccagttgacccatg 48398540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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