View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7147_high_9 (Length: 274)
Name: NF7147_high_9
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 6055517 - 6055766
Alignment:
| Q |
20 |
gtctatagtttggtattcatggcagaggaaaaatcaggacaaggaacaaatcctcctcaggaacagccaagtgagttctaatgnnnnnnnnnnnnnnnnn |
119 |
Q |
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| T |
6055517 |
gtctatagtttggtattcatggcagaagaaaaatcaggacaaggaacaaatcctcctcaggaacagccaagtgagttctaatgttttttttctttctttt |
6055616 |
T |
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| Q |
120 |
nnccggttaatctaatgattaaaaattcactcgtgattatatggagaatttgagcttaaactcgaagtcctacatatataaatagtgatattgaacatat |
219 |
Q |
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| T |
6055617 |
t--cggttaacctaatgattaaaaattcactcgtgattaagtggagaatttgagcttaaactcgaagtcctacatatataaatagtgatattgaacatat |
6055714 |
T |
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| Q |
220 |
attttggctttctcattaatataaaataattaatttcagggagaaataatcc |
271 |
Q |
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| T |
6055715 |
attttggctttctcattaatataaaataattaatttcagggagaaataatcc |
6055766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 6070746 - 6070699
Alignment:
| Q |
198 |
taaatagtgatattgaacatatattttggctttctcattaatataaaa |
245 |
Q |
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| T |
6070746 |
taaatagtgatattgaatatatattttggctttctcataaatataaaa |
6070699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 6070949 - 6070899
Alignment:
| Q |
31 |
ggtattcatggcagaggaaaaatcaggacaaggaacaaatcctcctcagga |
81 |
Q |
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| T |
6070949 |
ggtattcatggcagaggaaaaacaaggacaaggaacttatcctcctcagga |
6070899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 6070843 - 6070790
Alignment:
| Q |
131 |
ctaatgattaaaaattcactcgtgattatatggagaatttgagcttaaactcga |
184 |
Q |
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| T |
6070843 |
ctaataattaaaaattcactcgtgaataagtggagaattcgagtttaaactcga |
6070790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 6070680 - 6070652
Alignment:
| Q |
243 |
aaataattaatttcagggagaaataatcc |
271 |
Q |
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| T |
6070680 |
aaataattaatttcagggagaaataatcc |
6070652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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