View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7147_low_11 (Length: 269)

Name: NF7147_low_11
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7147_low_11
NF7147_low_11
[»] chr7 (8 HSPs)
chr7 (1-253)||(21123364-21123605)
chr7 (1-136)||(21111532-21111667)
chr7 (1-136)||(18658654-18658789)
chr7 (1-136)||(21130492-21130627)
chr7 (145-253)||(18659225-18659333)
chr7 (161-253)||(21112119-21112211)
chr7 (150-253)||(21131068-21131171)
chr7 (159-247)||(21107666-21107754)
[»] chr4 (2 HSPs)
chr4 (1-136)||(39132109-39132244)
chr4 (150-253)||(39131565-39131668)
[»] chr3 (4 HSPs)
chr3 (75-124)||(26698809-26698858)
chr3 (75-124)||(26733972-26734021)
chr3 (75-124)||(26737197-26737246)
chr3 (75-136)||(26751133-26751194)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 21123364 - 21123605
Alignment:
Q  1 gtagataagcaagaacactagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123364 gtagataagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 21123463  T
Q  101 attttccatgtactcatataccaaaattctatgcttcactcatatgcttcactcatatattcttctttagagaagttattaccttttggaagtctcaagt 200  Q
    |||||||||||||||||||||||||||||             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21123464 attttccatgtactcatataccaaaattc-------------tatgcttcactcatatactcttctttagagaagttattaccttttggaagtctcaagt 21123550  T
Q  201 atgt--tgttcctacaaaacttggtgagtgcctcccatttaacaattgtagcttt 253  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123551 atgtgctgttcctacaaaacttggtgagtgcctcccatttaacaattgtagcttt 21123605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21111532 - 21111667
Alignment:
Q  1 gtagataagcaagaacactagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111532 gtagataagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 21111631  T
Q  101 attttccatgtactcatataccaaaattctatgctt 136  Q
    |||||||||||||||||||||||||| |||||||||    
T  21111632 attttccatgtactcatataccaaaagtctatgctt 21111667  T

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Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18658654 - 18658789
Alignment:
Q  1 gtagataagcaagaacactagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 100  Q
    |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18658654 gtagataagctagaactttagctgttcctaaagcaatatcataccttttactccagtcaagtgtgttagttttagatgaaagattttcagctaaagatcc 18658753  T
Q  101 attttccatgtactcatataccaaaattctatgctt 136  Q
    |||||||||||||||||||||||||| |||||||||    
T  18658754 attttccatgtactcatataccaaaagtctatgctt 18658789  T

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Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21130492 - 21130627
Alignment:
Q  1 gtagataagcaagaacactagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 100  Q
    ||||||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||| ||    
T  21130492 gtagatatgctaaaactctagctgttcctaaagcaatatcataccttttagtccaatcaagtgtgttggttttggatgaaagattttccgctaaagaacc 21130591  T
Q  101 attttccatgtactcatataccaaaattctatgctt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  21130592 attttccatgtactcatataccaaaattctatgctt 21130627  T

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Target: chr7; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 18659225 - 18659333
Alignment:
Q  145 tgcttcactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaat 244  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  18659225 tgctacactcatatactcttctttagagaagttattaccttttggaaatctcaagtatgttgttcctacaaaacttggcgagtgcctcccgtttaacaat 18659324  T
Q  245 tgtagcttt 253  Q
    |||||||||    
T  18659325 tgtagcttt 18659333  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 21112119 - 21112211
Alignment:
Q  161 tcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtagcttt 253  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||| || ||||||||||||| |||||||||||||    
T  21112119 tcttccttagagaagttattaccttttggaagtctcaagaatgttttgcctataaaacttggggaatgcctcccatttagcaattgtagcttt 21112211  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 21131068 - 21131171
Alignment:
Q  150 cactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtag 249  Q
    |||||||| |||||| |||  ||||||||||||||||||| ||||||||||| ||| |||||  |||||||||||| | ||||||||| | ||||||||     
T  21131068 cactcatagattcttgtttgtagaagttattaccttttgggagtctcaagtaagttattccttgaaaacttggtgaatacctcccattcagcaattgtat 21131167  T
Q  250 cttt 253  Q
    ||||    
T  21131168 cttt 21131171  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 21107754 - 21107666
Alignment:
Q  159 attcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgt 247  Q
    ||||||||||||||||| |||||||||| || |  |||||||| |||| |||||||||   |||||| ||||| ||||||  |||||||    
T  21107754 attcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaagaatggtgaatgccttccatttcgcaattgt 21107666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 39132244 - 39132109
Alignment:
Q  1 gtagataagcaagaacactagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatcc 100  Q
    |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |    
T  39132244 gtagataagctaggactctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtc 39132145  T
Q  101 attttccatgtactcatataccaaaattctatgctt 136  Q
    ||| | ||||||||||||||||||||||||||||||    
T  39132144 attcttcatgtactcatataccaaaattctatgctt 39132109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 39131668 - 39131565
Alignment:
Q  150 cactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtag 249  Q
    |||||||| | |||| ||||| |||||||||||||||||||||||||||||| |||||||||  |||||||||||| | ||||||||| ||||| | |||    
T  39131668 cactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagttgttcctcgaaaacttggtgaatacctcccattcaacaaatttag 39131569  T
Q  250 cttt 253  Q
    ||||    
T  39131568 cttt 39131565  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 26698809 - 26698858
Alignment:
Q  75 gatgaaagattttcagctaaagatccattttccatgtactcatataccaa 124  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26698809 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaa 26698858  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 26733972 - 26734021
Alignment:
Q  75 gatgaaagattttcagctaaagatccattttccatgtactcatataccaa 124  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26733972 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaa 26734021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 26737197 - 26737246
Alignment:
Q  75 gatgaaagattttcagctaaagatccattttccatgtactcatataccaa 124  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26737197 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaa 26737246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 26751133 - 26751194
Alignment:
Q  75 gatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattctatgctt 136  Q
    ||||| ||||| ||||||||||  || ||||||||||||||||| ||||| | |||||||||    
T  26751133 gatgagagattatcagctaaagtacccttttccatgtactcataaaccaacaatctatgctt 26751194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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