View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7147_low_12 (Length: 269)
Name: NF7147_low_12
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 28462161 - 28462049
Alignment:
| Q |
157 |
tcatctccacctcctcggattccgacttccatatccaccatcattgtgagttcatttaccttctacgagtaaacttatatattttatacatgtgtgaaaa |
256 |
Q |
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| T |
28462161 |
tcatctccacctcctcggattccgacttccatatccaccatcattgtgagttcatttaccttctacgagtaaacttatatattttatacatgtgtgaaaa |
28462062 |
T |
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| Q |
257 |
ttagttgtttaac |
269 |
Q |
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| T |
28462061 |
ttagttgtttaac |
28462049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 28462247 - 28462131
Alignment:
| Q |
15 |
atctcaacatccttgaattccaatttctacctctattaaggagcacacggccgtcatgaattcctcctacaattcaacatcacccatcatctccatctcc |
114 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28462247 |
atctcgacatccttaaattccaatttctacctctattaaggagcacacggccgtcatgaattcctcctacaattcaacatcacccatcatctccacctcc |
28462148 |
T |
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| Q |
115 |
tcggattccgatttcca |
131 |
Q |
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| T |
28462147 |
tcggattccgacttcca |
28462131 |
T |
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