View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7147_low_18 (Length: 247)

Name: NF7147_low_18
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7147_low_18
NF7147_low_18
[»] chr8 (10 HSPs)
chr8 (1-204)||(43917478-43917681)
chr8 (5-127)||(35901439-35901560)
chr8 (1-127)||(11150891-11151016)
chr8 (5-124)||(10029133-10029252)
chr8 (5-127)||(3137368-3137490)
chr8 (5-50)||(3347534-3347579)
chr8 (79-126)||(20542356-20542403)
chr8 (70-125)||(31330970-31331025)
chr8 (64-121)||(27162809-27162866)
chr8 (67-127)||(33621340-33621400)
[»] chr4 (9 HSPs)
chr4 (5-127)||(27284040-27284162)
chr4 (6-50)||(35395345-35395389)
chr4 (67-127)||(36506755-36506815)
chr4 (64-127)||(20775040-20775103)
chr4 (5-50)||(41142317-41142362)
chr4 (5-50)||(44190264-44190309)
chr4 (2-50)||(19147168-19147216)
chr4 (10-50)||(39810731-39810771)
chr4 (79-127)||(39810799-39810847)
[»] chr1 (2 HSPs)
chr1 (5-127)||(13969122-13969244)
chr1 (5-125)||(32187024-32187143)
[»] chr7 (9 HSPs)
chr7 (5-126)||(16979911-16980032)
chr7 (5-127)||(19676963-19677085)
chr7 (64-125)||(16685700-16685762)
chr7 (64-125)||(17659936-17659998)
chr7 (5-50)||(18037873-18037918)
chr7 (13-50)||(21515064-21515101)
chr7 (1-50)||(28004218-28004267)
chr7 (65-126)||(33194691-33194752)
chr7 (5-50)||(34993151-34993196)
[»] chr6 (3 HSPs)
chr6 (5-98)||(5611152-5611245)
chr6 (1-42)||(33121330-33121371)
chr6 (67-127)||(27082279-27082339)
[»] chr3 (6 HSPs)
chr3 (64-126)||(42437796-42437858)
chr3 (5-125)||(1711947-1712067)
chr3 (5-98)||(28709589-28709682)
chr3 (5-46)||(44698267-44698308)
chr3 (2-46)||(6785814-6785858)
chr3 (12-126)||(12109615-12109733)
[»] chr2 (13 HSPs)
chr2 (64-125)||(43080387-43080448)
chr2 (5-124)||(4978775-4978894)
chr2 (5-124)||(4996683-4996802)
chr2 (5-116)||(40346687-40346798)
chr2 (64-125)||(3689699-3689760)
chr2 (5-50)||(8312425-8312470)
chr2 (68-121)||(14952998-14953051)
chr2 (15-125)||(18717820-18717930)
chr2 (5-45)||(23453395-23453435)
chr2 (75-126)||(8580481-8580532)
chr2 (79-125)||(40574240-40574286)
chr2 (5-46)||(7141163-7141204)
chr2 (64-127)||(28331336-28331400)
[»] chr5 (7 HSPs)
chr5 (5-125)||(22293954-22294074)
chr5 (75-126)||(41175420-41175471)
chr5 (1-46)||(2089135-2089180)
chr5 (5-46)||(36482100-36482141)
chr5 (79-127)||(5471267-5471315)
chr5 (5-41)||(8151818-8151854)
chr5 (6-46)||(30840622-30840662)
[»] scaffold0039 (1 HSPs)
scaffold0039 (12-50)||(30017-30055)
[»] scaffold0204 (1 HSPs)
scaffold0204 (2-35)||(15386-15419)
[»] scaffold0329 (1 HSPs)
scaffold0329 (6-46)||(7408-7448)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43917681 - 43917478
Alignment:
Q  1 aaatttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatc 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||       |||||||||| ||| ||||||||||||||||||||||    
T  43917681 aaatttttgtcttgaaaatataaggcgttacttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatgcttaaccaatatc 43917582  T
Q  101 cttggtgcactggttagcattctccatgcaataatttgttatgttatgtcaaactacgatcctccctaccagctcgataactataatacttgatttgatt 200  Q
    |||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43917581 cttaatgcactggttagcattctcctagcaataatttgttatgttatgtcaaactacgatcctccctaccagctcgaaaactataatacttgatttgatt 43917482  T
Q  201 aatg 204  Q
    ||||    
T  43917481 aatg 43917478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 35901439 - 35901560
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||| |||||||| |||| ||||||||||||| ||||||| |||| ||||       ||||||| || ||| |||||||||||||||||||| ||||     
T  35901439 ttttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttacttgttttggatgcttaaccaatacccttt 35901538  T
Q  105 gtgcactggttagcattctccat 127  Q
    | |||| ||||| ||||||||||    
T  35901539 g-gcaccggttaacattctccat 35901560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 11151016 - 11150891
Alignment:
Q  1 aaatttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatc 100  Q
    |||||||||||||  ||||||||| |||||||||| |||||||||| |||  ||||        |||||| || ||||||||| |||||||||||||  |    
T  11151016 aaatttttgtcttagaaatataagatgttacttttgatcaaataatgattacacaattttttt-taaaaacttacttattttgaatgcttaaccaatgcc 11150918  T
Q  101 cttggtgcactggttagcattctccat 127  Q
    ||| | ||| |||||||||||||||||    
T  11150917 cttagggcagtggttagcattctccat 11150891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 10029252 - 10029133
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||| ||||| ||||||||| |||||||||| ||||| |||| ||| |||||       |||||||||| |||  |||||||||||||||||| || |||    
T  10029252 ttttatcttggaaatataagatgttacttttgatcaagtaatgattatacaactttttcataaaaatttacttgatttggatgcttaaccaatgtctttg 10029153  T
Q  105 gtgcactggttagcattctc 124  Q
    |  |||| |||| |||||||    
T  10029152 ggacactagttatcattctc 10029133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 3137490 - 3137368
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    ||||||||||||||| |||| |||||||||| ||||| |||| |||  ||||       ||| ||| ||  || |||||||||| |||||||| | |||     
T  3137490 ttttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaacttatttgttttggatgcctaaccaatgttctta 3137391  T
Q  105 gtgcactggttagcattctccat 127  Q
    | |||||||||||||||||||||    
T  3137390 gggcactggttagcattctccat 3137368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 3347534 - 3347579
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||||||||||||||||||| ||||||||||||| || ||||||||    
T  3347534 ttttgtcttgaaaatataagatgttacttttaataaagtaataatt 3347579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 20542403 - 20542356
Alignment:
Q  79 ttttggatgcttaaccaatatccttggtgcactggttagcattctcca 126  Q
    |||||||||||||||||||  |||||| |||| |||||||||||||||    
T  20542403 ttttggatgcttaaccaatgcccttggggcacgggttagcattctcca 20542356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 31331025 - 31330970
Alignment:
Q  70 atttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctcc 125  Q
    |||||||| ||||||||||||||||||| ||||| |  ||||||||| ||||||||    
T  31331025 atttgcttgttttggatgcttaaccaatgtccttagaacactggttaacattctcc 31330970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 27162866 - 27162809
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcatt 121  Q
    ||||||| |||||| ||||||||||||||||||| || ||||  |||| |||||||||    
T  27162866 ataaaaacttgcttgttttggatgcttaaccaatgtctttggatcactagttagcatt 27162809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 33621400 - 33621340
Alignment:
Q  67 aaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctccat 127  Q
    ||||||| ||| ||||||||| |||||||||  |||||| ||| || ||||||||||||||    
T  33621400 aaaatttacttgttttggatgtttaaccaatgcccttggagcattgattagcattctccat 33621340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 27284162 - 27284040
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||       ||||||| ||  |||||||||||| |||||||||  |||||    
T  27284162 ttttgtcttggaaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaacttatttattttggatgtttaaccaatgcccttg 27284063  T
Q  105 gtgcactggttagcattctccat 127  Q
    | | ||| |||| ||||||||||    
T  27284062 gggtactcgttaacattctccat 27284040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 35395345 - 35395389
Alignment:
Q  6 tttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    ||||| || |||||||||| |||||||||||||||||||||||||    
T  35395345 tttgttttaaaaatataagatgttacttttaatcaaataataatt 35395389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 36506755 - 36506815
Alignment:
Q  67 aaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctccat 127  Q
    ||||||| ||| |||||||||||||| ||||  |||||| ||| |||||||||||||||||    
T  36506755 aaaatttacttgttttggatgcttaagcaatgcccttggagcattggttagcattctccat 36506815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 20775103 - 20775040
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctccat 127  Q
    ||||||| || ||| ||||||||||||||||||| || |||| |||||  ||||||||||||||    
T  20775103 ataaaaacttacttgttttggatgcttaaccaatgtctttggagcactatttagcattctccat 20775040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 41142317 - 41142362
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||||||||||||| ||||||| |||||||| || |||||||||||    
T  41142317 ttttgtcttgaaaaaataaggtcttacttttgattaaataataatt 41142362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 44190309 - 44190264
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||| ||||||||||||||| |||||||||| ||||| ||||||||    
T  44190309 ttttatcttgaaaatataagatgttacttttgatcaagtaataatt 44190264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 19147168 - 19147216
Alignment:
Q  2 aatttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    ||||| ||||||||||||||||  ||| |||||| ||||||||||||||    
T  19147168 aatttctgtcttgaaaatataaactgtcactttttatcaaataataatt 19147216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 39810731 - 39810771
Alignment:
Q  10 tcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  39810731 tcttgaaaatataagatgttacttttgatcaagtaataatt 39810771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 39810799 - 39810847
Alignment:
Q  79 ttttggatgcttaaccaatatccttggtgcactggttagcattctccat 127  Q
    ||||||||| |||||||||| |||||| ||| | |||||||||||||||    
T  39810799 ttttggatgtttaaccaatacccttggggcaatagttagcattctccat 39810847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 13969122 - 13969244
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||  ||||||||||||| || |||| |||  ||||       ||||||| || ||| |||||| |||||||||||||  ||||    
T  13969122 ttttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgttttggttgcttaaccaatactcttg 13969221  T
Q  105 gtgcactggttagcattctccat 127  Q
    | |||||||||| ||||||||||    
T  13969222 gggcactggttaacattctccat 13969244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 32187143 - 32187024
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||| ||||       || ||||||| ||| ||||| || |||||||||| ||||||    
T  32187143 ttttgtcttgaaaatataagatgttacttttgatcagataataattgcacaacttttcaat-aaaatttacttgttttgaattcttaaccaatgtccttg 32187045  T
Q  105 gtgcactggttagcattctcc 125  Q
      |||| ||||| ||||||||    
T  32187044 aggcaccggttatcattctcc 32187024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 16980032 - 16979911
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||| |||||||||| ||| | |||||||   ||||       |||||||||| ||| |||||||||||||||||||  ||||     
T  16980032 ttttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaaccaatgccctta 16979933  T
Q  105 gtgcactggttagcattctcca 126  Q
    | ||||  ||||||||||||||    
T  16979932 gagcaccagttagcattctcca 16979911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 19677085 - 19676963
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||| |||||||||| || || |||| |||  |||        |  |||| |||||| ||| |||||||||||||||  |||||    
T  19677085 ttttgtcttgaaaatataagatgttacttttgattaagtaatgattacacaccttttacaccaaaacttgcttgtttaggatgcttaaccaatgcccttg 19676986  T
Q  105 gtgcactggttagcattctccat 127  Q
    | ||||| |||||||||||||||    
T  19676985 gggcactagttagcattctccat 19676963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 16685762 - 16685700
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatcctt-ggtgcactggttagcattctcc 125  Q
    ||||||| || |||||||||||||||||||||||||| || || |||||  ||||||||||||    
T  16685762 ataaaaacttacttattttggatgcttaaccaatatctttgggggcactaattagcattctcc 16685700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 17659998 - 17659936
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatcctt-ggtgcactggttagcattctcc 125  Q
    ||||||| || |||||||||||||||||||||||||| || || |||||  ||||||||||||    
T  17659998 ataaaaacttacttattttggatgcttaaccaatatctttgggggcactaattagcattctcc 17659936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 18037873 - 18037918
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||||| ||||||||||||  |||||||||| ||||||||||||||    
T  18037873 ttttgttttgaaaatataaattgttacttttgatcaaataataatt 18037918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 21515101 - 21515064
Alignment:
Q  13 tgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  21515101 tgaaaatacaagatgttacttttaatcaaataataatt 21515064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28004267 - 28004218
Alignment:
Q  1 aaatttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||||||||||||||||||||||| | ||  |||| ||||||||||||||    
T  28004267 aaatttttgtcttgaaaatataagcttttggttttgatcaaataataatt 28004218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 33194752 - 33194691
Alignment:
Q  65 taaaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctcca 126  Q
    ||||||||| |||||||| | ||||||||||||||| | ||  || ||||||||||||||||    
T  33194752 taaaaatttacttattttagttgcttaaccaatatcttggggacaatggttagcattctcca 33194691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 34993151 - 34993196
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    ||||||||| |||||||||| |||||||||| || |||||||||||    
T  34993151 ttttgtcttaaaaatataagatgttacttttgataaaataataatt 34993196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 5611152 - 5611245
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaata 98  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||| |||||       ||||||| || ||| ||||||||| ||||||||||    
T  5611152 ttttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgttttggatgtttaaccaata 5611245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33121330 - 33121371
Alignment:
Q  1 aaatttttgtcttgaaaatataaggtgttacttttaatcaaa 42  Q
    |||||||||||||||||||||||| ||||| |||| ||||||    
T  33121330 aaatttttgtcttgaaaatataagatgttattttttatcaaa 33121371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 27082339 - 27082279
Alignment:
Q  67 aaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctccat 127  Q
    ||||||| ||| |||||| || ||||||||| ||||||| |||||  ||||||||||||||    
T  27082339 aaaatttacttgttttggttgtttaaccaatgtccttggggcactatttagcattctccat 27082279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 42437796 - 42437858
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctcca 126  Q
    |||||| ||||| | |||||||||||||||||||  |||||| ||||||||||||||||||||    
T  42437796 ataaaattttgcgtgttttggatgcttaaccaatgcccttggggcactggttagcattctcca 42437858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 1711947 - 1712067
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||| |||||| ||| |  || |||||||| ||| |        ||||||||| |||||||| | || |||||||||| ||||     
T  1711947 ttttgtcttgaaaatataagatgttacatttgactaagtaataattatactattttttattaaaaatttacttattttagttgtttaaccaataccctta 1712046  T
Q  105 gtgcactggttagcattctcc 125  Q
    || ||||||||||||||||||    
T  1712047 gtacactggttagcattctcc 1712067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 28709589 - 28709682
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaata 98  Q
    |||| ||||||||||||||  |||||||||| |||||||||| ||| |||||       ||| ||| || ||||||||| ||||||||||||||    
T  28709589 ttttatcttgaaaatataaaatgttacttttgatcaaataatgattatacaacttttttatagaaacttacttattttgaatgcttaaccaata 28709682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 44698308 - 44698267
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    |||||||||||||||||||| |||||||||| || |||||||    
T  44698308 ttttgtcttgaaaatataagatgttacttttgataaaataat 44698267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 6785814 - 6785858
Alignment:
Q  2 aatttttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    ||||||||||||||||||||||  |||||||||| ||||| ||||    
T  6785814 aatttttgtcttgaaaatataaaatgttacttttgatcaagtaat 6785858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 12109733 - 12109615
Alignment:
Q  12 ttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaa----ccaatatccttggtg 107  Q
    ||||||||||||| | ||||||||||  || |||||||| |||||       ||||||| ||| || ||||||||||||||    ||||||||| |||      
T  12109733 ttgaaaatataagatattacttttaactaagtaataattatacaactttttcataaaaaattgtttgttttggatgcttaattaaccaatatccatggga 12109634  T
Q  108 cactggttagcattctcca 126  Q
    ||| |||||||||||||||    
T  12109633 caccggttagcattctcca 12109615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 43080387 - 43080448
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctcc 125  Q
    ||||||||||| || ||||||||||||||||||||||||  | |||||||||| ||||||||    
T  43080387 ataaaaatttgattgttttggatgcttaaccaatatcctcagggcactggttaacattctcc 43080448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 4978775 - 4978894
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||| |||||||||| ||||| |||| |||  ||||       ||||||| ||  |||||||||||| ||||||||| | ||||    
T  4978775 ttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatgttcttg 4978874  T
Q  105 gtgcactggttagcattctc 124  Q
      ||||| |||| |||||||    
T  4978875 tagcactagttatcattctc 4978894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 4996683 - 4996802
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||||||||||||| |||||||||| ||||| |||| |||  ||||       ||||||| ||  |||||||||||| ||||||||| | ||||    
T  4996683 ttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatgttcttg 4996782  T
Q  105 gtgcactggttagcattctc 124  Q
      ||||| |||| |||||||    
T  4996783 tagcactagttatcattctc 4996802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 40346798 - 40346687
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||| ||||||||||||| ||||| |||| |||||||||| |||| ||||       ||||||| || |||||||||||| |||||| ||||   |||    
T  40346798 ttttgtattgaaaatataagatgttatttttgatcaaataatgattgcacaactttttcataaaaacttacttattttggatacttaactaatacatttg 40346699  T
Q  105 gtgcactggtta 116  Q
    | ||||||||||    
T  40346698 gggcactggtta 40346687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 3689699 - 3689760
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcattctcc 125  Q
    |||||| | ||||| |||||| ||||||||||||  |||||| |||||||||||||||||||    
T  3689699 ataaaattgtgcttgttttggctgcttaaccaatgcccttggggcactggttagcattctcc 3689760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 8312425 - 8312470
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||    
T  8312425 ttttgttttgaaaatataagttgttactttcaatcaaataataatt 8312470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 14953051 - 14952998
Alignment:
Q  68 aaatttgcttattttggatgcttaaccaatatccttggtgcactggttagcatt 121  Q
    |||||| ||||||||||||||||||||||||| ||| | ||||| |||||||||    
T  14953051 aaatttacttattttggatgcttaaccaatattcttagagcacttgttagcatt 14952998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 18717930 - 18717820
Alignment:
Q  15 aaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttggtgcactggt 114  Q
    |||||||||| |||||||||| ||||| |||| |||  ||||       || |||||||| || ||||||||||||||| |||||| ||||  |||| ||    
T  18717930 aaaatataagatgttacttttgatcaagtaatgattacacaactttttcatgaaaatttgtttgttttggatgcttaactaatatctttgggacacttgt 18717831  T
Q  115 tagcattctcc 125  Q
    |||||||||||    
T  18717830 tagcattctcc 18717820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 23453435 - 23453395
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataa 45  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  23453435 ttttgtcttgaaaatataagatgttacttttgatcaaataa 23453395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 8580532 - 8580481
Alignment:
Q  75 cttattttggatgcttaaccaatatccttggtgcactggttagcattctcca 126  Q
    |||| ||||||||||||||||||  |||| | ||||||||||||||||||||    
T  8580532 cttactttggatgcttaaccaatgcccttagggcactggttagcattctcca 8580481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 40574240 - 40574286
Alignment:
Q  79 ttttggatgcttaaccaatatccttggtgcactggttagcattctcc 125  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||    
T  40574240 ttttggatgcttaaccattgcccttggggcactggttagcattctcc 40574286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 7141204 - 7141163
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    |||||||||||||| |||||||||||||||| | ||||||||    
T  7141204 ttttgtcttgaaaacataaggtgttacttttgaccaaataat 7141163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 28331336 - 28331400
Alignment:
Q  64 ataaaaatttgcttattttggatgcttaacc-aatatccttggtgcactggttagcattctccat 127  Q
    ||||||| || ||||||||| |||||||||| |||| |||||| ||||| || ||||||||||||    
T  28331336 ataaaaacttacttattttgaatgcttaaccaaatacccttggggcactagtcagcattctccat 28331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 22294074 - 22293954
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataataattgtacaannnnnnnataaaaatttgcttattttggatgcttaaccaatatccttg 104  Q
    |||||||||| ||||||||| | ||  |||| |||||||||| |||| ||||       ||||||| || ||| ||||| ||| |||||||||| |||||    
T  22294074 ttttgtcttggaaatataagatattggttttgatcaaataattattgcacaactttttcataaaaacttacttgttttgaatgtttaaccaatacccttg 22293975  T
Q  105 gtgcactggttagcattctcc 125  Q
      |||||||||||||||||||    
T  22293974 tggcactggttagcattctcc 22293954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 41175420 - 41175471
Alignment:
Q  75 cttattttggatgcttaaccaatatccttggtgcactggttagcattctcca 126  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  41175420 cttaatttggatgtttaaccaatattcttgggacactggttagcattctcca 41175471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2089135 - 2089180
Alignment:
Q  1 aaatttttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||||    
T  2089135 aaatttttgtcttggaaatataagattttacttttgatcaaataat 2089180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 36482141 - 36482100
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    |||||| ||||||||||||| |||||||||| ||||||||||    
T  36482141 ttttgttttgaaaatataagatgttacttttgatcaaataat 36482100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 5471267 - 5471315
Alignment:
Q  79 ttttggatgcttaaccaatatccttggtgcactggttagcattctccat 127  Q
    ||||||||||||||||||| || |||| ||||| |||| ||||||||||    
T  5471267 ttttggatgcttaaccaatgtcattggggcactagttaacattctccat 5471315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 8151818 - 8151854
Alignment:
Q  5 ttttgtcttgaaaatataaggtgttacttttaatcaa 41  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  8151818 ttttgttttgaaaatataagatgttacttttaatcaa 8151854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 30840622 - 30840662
Alignment:
Q  6 tttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    ||||||||||||||||||| |||||||||| ||||| ||||    
T  30840622 tttgtcttgaaaatataagatgttacttttgatcaagtaat 30840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 30017 - 30055
Alignment:
Q  12 ttgaaaatataaggtgttacttttaatcaaataataatt 50  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  30017 ttgaaaatataagatgttacttttaattaaataataatt 30055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 15386 - 15419
Alignment:
Q  2 aatttttgtcttgaaaatataaggtgttactttt 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  15386 aatttttgtcttgaaaatataagatgttactttt 15419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 7448 - 7408
Alignment:
Q  6 tttgtcttgaaaatataaggtgttacttttaatcaaataat 46  Q
    ||||||||||||||||||| | |||||||| ||||||||||    
T  7448 tttgtcttgaaaatataagatattacttttgatcaaataat 7408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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