View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7147_low_2 (Length: 545)
Name: NF7147_low_2
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 227 - 529
Target Start/End: Original strand, 42666864 - 42667166
Alignment:
| Q |
227 |
tatccattccattccattgcatcacactttccacaccatcctccaacaatttcattgcggcgttgaaattcaagaaaatggaacaaggaaagcaaggagc |
326 |
Q |
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| T |
42666864 |
tatccattccattccattgcatcacactttccacacaatcctccaacaatttcattgcggcgttgaaattcaagaaaatggaacaaggaaagcaaggagc |
42666963 |
T |
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| Q |
327 |
aatggtgttgaaaggtttaccacaacaacttcaaaacccaattgaccaaattcaaactcgttacaaacacttagaaaatggtttcaagctttggctctct |
426 |
Q |
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| T |
42666964 |
aatggtgttgaaaggtttaccacaacaacttcaaaacccaattgaccaaattcaaactcgttacaaacacttagaaaatggtttcaagctttggctttct |
42667063 |
T |
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| Q |
427 |
aaacagtccatcgccgttgaagccgccgtcgttaccacaaccggcgccgctcaaggtgccgctattggtgctttcctgggtactctcaccggtgatgcat |
526 |
Q |
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| T |
42667064 |
aaacagtccatcgccgttgaagccgccgtcgttaccacaaccggcgccgctcaaggtgccgctattggtgctttcctgggtactctcaccggtgatgcat |
42667163 |
T |
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| Q |
527 |
ctt |
529 |
Q |
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||| |
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| T |
42667164 |
ctt |
42667166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 42666684 - 42666740
Alignment:
| Q |
21 |
tagcgtacaaaaacgatggcaccgcttcggtttttccagttaaaatggccggtttcc |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42666684 |
tagcgtacaaaaacgatggcaccgcttcggtttttccatttaaaatggccggtttcc |
42666740 |
T |
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