View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7147_low_6 (Length: 365)

Name: NF7147_low_6
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7147_low_6
NF7147_low_6
[»] chr5 (33 HSPs)
chr5 (18-353)||(43385703-43386039)
chr5 (110-288)||(32157350-32157528)
chr5 (151-352)||(15931975-15932177)
chr5 (113-294)||(27905480-27905661)
chr5 (147-285)||(18879654-18879792)
chr5 (113-209)||(3805417-3805513)
chr5 (113-206)||(19283631-19283724)
chr5 (112-204)||(11136712-11136804)
chr5 (115-254)||(1840976-1841115)
chr5 (113-204)||(26217423-26217514)
chr5 (113-271)||(26299446-26299604)
chr5 (113-271)||(27450972-27451130)
chr5 (113-271)||(34720045-34720203)
chr5 (113-271)||(34724021-34724179)
chr5 (112-306)||(20188349-20188543)
chr5 (112-201)||(14501398-14501487)
chr5 (113-206)||(34856946-34857039)
chr5 (113-253)||(4983965-4984100)
chr5 (112-285)||(22921437-22921603)
chr5 (113-285)||(29322063-29322223)
chr5 (160-271)||(39408766-39408877)
chr5 (113-271)||(26297905-26298063)
chr5 (116-301)||(1224567-1224752)
chr5 (131-260)||(19715791-19715919)
chr5 (113-253)||(10493379-10493514)
chr5 (113-280)||(5385062-5385229)
chr5 (222-285)||(38523225-38523288)
chr5 (160-271)||(39407028-39407139)
chr5 (222-295)||(20191192-20191265)
chr5 (113-254)||(27195428-27195564)
chr5 (158-206)||(28430594-28430642)
chr5 (222-301)||(2675410-2675488)
chr5 (113-178)||(34520226-34520291)
[»] chr7 (40 HSPs)
chr7 (113-316)||(7539588-7539791)
chr7 (113-285)||(666184-666356)
chr7 (113-285)||(36926409-36926581)
chr7 (113-285)||(42071520-42071692)
chr7 (113-285)||(43052282-43052454)
chr7 (113-285)||(5776533-5776705)
chr7 (117-285)||(26215721-26215889)
chr7 (147-285)||(3931316-3931455)
chr7 (113-288)||(7443829-7444004)
chr7 (113-285)||(37333697-37333870)
chr7 (113-287)||(222909-223083)
chr7 (113-203)||(17026048-17026138)
chr7 (112-209)||(20259974-20260071)
chr7 (111-285)||(388425-388587)
chr7 (131-260)||(8110777-8110906)
chr7 (113-284)||(20400173-20400343)
chr7 (113-301)||(49035017-49035205)
chr7 (130-281)||(18250618-18250769)
chr7 (113-266)||(5795493-5795634)
chr7 (113-285)||(15433629-15433789)
chr7 (130-288)||(8390103-8390261)
chr7 (131-253)||(45054811-45054933)
chr7 (113-186)||(31490697-31490770)
chr7 (222-285)||(28950273-28950336)
chr7 (112-187)||(45174636-45174711)
chr7 (113-187)||(28950360-28950433)
chr7 (231-295)||(3941795-3941859)
chr7 (158-286)||(18740826-18740954)
chr7 (162-206)||(22074610-22074654)
chr7 (231-295)||(27232366-27232430)
chr7 (113-193)||(30918930-30919010)
chr7 (117-177)||(37106150-37106210)
chr7 (159-194)||(11596486-11596521)
chr7 (117-176)||(42012255-42012314)
chr7 (231-285)||(35544137-35544191)
chr7 (235-288)||(45174736-45174789)
chr7 (231-287)||(10618139-10618195)
chr7 (223-259)||(17608138-17608174)
chr7 (237-301)||(32239580-32239644)
chr7 (231-295)||(37106265-37106329)
[»] chr3 (25 HSPs)
chr3 (145-300)||(39943685-39943840)
chr3 (113-288)||(39471044-39471219)
chr3 (113-209)||(7029135-7029231)
chr3 (112-204)||(5418042-5418134)
chr3 (147-285)||(32688593-32688731)
chr3 (116-287)||(38644191-38644361)
chr3 (113-287)||(52198776-52198950)
chr3 (113-266)||(46294224-46294377)
chr3 (110-254)||(33895913-33896057)
chr3 (112-254)||(25252873-25253015)
chr3 (147-212)||(39133812-39133877)
chr3 (113-206)||(20407797-20407890)
chr3 (113-253)||(30740732-30740872)
chr3 (113-204)||(27040593-27040684)
chr3 (222-301)||(54394005-54394084)
chr3 (113-295)||(53530115-53530296)
chr3 (113-187)||(54432945-54433019)
chr3 (115-204)||(40942902-40942986)
chr3 (114-213)||(20661675-20661775)
chr3 (113-181)||(41609314-41609382)
chr3 (222-301)||(33439195-33439274)
chr3 (223-285)||(23206905-23206967)
chr3 (108-213)||(19561447-19561547)
chr3 (159-213)||(9505881-9505935)
chr3 (113-178)||(54394116-54394181)
[»] chr4 (37 HSPs)
chr4 (113-285)||(9469428-9469599)
chr4 (113-285)||(19850132-19850304)
chr4 (113-285)||(49820378-49820550)
chr4 (120-285)||(50605462-50605627)
chr4 (113-285)||(21436307-21436479)
chr4 (149-285)||(53369098-53369234)
chr4 (113-288)||(4275507-4275682)
chr4 (112-283)||(43386533-43386704)
chr4 (111-285)||(48977002-48977176)
chr4 (113-203)||(52705593-52705683)
chr4 (115-202)||(7505426-7505513)
chr4 (113-206)||(51994083-51994176)
chr4 (184-288)||(36543365-36543469)
chr4 (113-188)||(48732021-48732096)
chr4 (113-287)||(22183763-22183937)
chr4 (112-206)||(25133932-25134026)
chr4 (159-287)||(52813045-52813173)
chr4 (113-285)||(44792761-44792921)
chr4 (136-280)||(51409087-51409231)
chr4 (113-204)||(40797154-40797245)
chr4 (222-285)||(45674401-45674464)
chr4 (116-194)||(22720747-22720825)
chr4 (113-209)||(79760-79856)
chr4 (113-213)||(50240934-50241034)
chr4 (158-280)||(28266717-28266839)
chr4 (222-301)||(36156862-36156941)
chr4 (147-213)||(46945215-46945281)
chr4 (113-194)||(11055892-11055973)
chr4 (120-205)||(38493652-38493737)
chr4 (158-203)||(44377650-44377695)
chr4 (113-176)||(52812967-52813030)
chr4 (222-301)||(54742194-54742273)
chr4 (113-187)||(12790212-12790286)
chr4 (119-181)||(45674310-45674372)
chr4 (231-301)||(48340198-48340268)
chr4 (158-204)||(50711490-50711536)
chr4 (158-203)||(16743169-16743214)
[»] chr2 (24 HSPs)
chr2 (113-285)||(36538077-36538249)
chr2 (113-271)||(20986064-20986222)
chr2 (113-280)||(27633142-27633309)
chr2 (155-285)||(41958589-41958719)
chr2 (147-271)||(12139400-12139524)
chr2 (113-253)||(2647600-2647740)
chr2 (113-287)||(44741262-44741436)
chr2 (108-212)||(18667120-18667224)
chr2 (142-209)||(39801150-39801217)
chr2 (113-259)||(11027287-11027433)
chr2 (147-285)||(26435801-26435939)
chr2 (113-280)||(33830890-33831045)
chr2 (158-288)||(38410203-38410333)
chr2 (192-285)||(33164532-33164625)
chr2 (113-168)||(1093914-1093969)
chr2 (222-301)||(30711560-30711639)
chr2 (226-288)||(20204353-20204415)
chr2 (113-178)||(18053394-18053459)
chr2 (234-295)||(34116711-34116772)
chr2 (158-275)||(40675210-40675327)
chr2 (226-285)||(34064242-34064301)
chr2 (119-197)||(35380360-35380438)
chr2 (113-203)||(41648743-41648833)
chr2 (113-186)||(29478043-29478116)
[»] chr6 (15 HSPs)
chr6 (113-288)||(7957054-7957229)
chr6 (108-280)||(18961840-18962012)
chr6 (113-285)||(10346212-10346384)
chr6 (126-204)||(33109845-33109923)
chr6 (119-254)||(13311359-13311489)
chr6 (113-207)||(6998576-6998670)
chr6 (158-306)||(25181112-25181260)
chr6 (225-287)||(6998659-6998721)
chr6 (231-301)||(10962374-10962444)
chr6 (113-253)||(7436700-7436839)
chr6 (142-213)||(22295385-22295456)
chr6 (158-260)||(12428088-12428190)
chr6 (113-201)||(17439537-17439625)
chr6 (231-303)||(26644007-26644079)
chr6 (231-303)||(26749973-26750045)
[»] chr1 (41 HSPs)
chr1 (116-285)||(36418523-36418692)
chr1 (155-271)||(37441795-37441911)
chr1 (113-271)||(32179333-32179491)
chr1 (112-302)||(45582050-45582240)
chr1 (113-280)||(45654340-45654507)
chr1 (113-280)||(21681595-21681762)
chr1 (108-254)||(7955644-7955790)
chr1 (111-205)||(28005733-28005827)
chr1 (110-254)||(15257845-15257984)
chr1 (113-253)||(29678104-29678244)
chr1 (113-203)||(5205160-5205250)
chr1 (113-286)||(24575300-24575473)
chr1 (113-206)||(38061666-38061759)
chr1 (131-271)||(31868907-31869047)
chr1 (113-253)||(43090032-43090167)
chr1 (113-199)||(47603463-47603549)
chr1 (149-285)||(35309044-35309176)
chr1 (113-285)||(24470494-24470654)
chr1 (113-301)||(42936495-42936685)
chr1 (113-295)||(40002320-40002502)
chr1 (150-295)||(7994783-7994927)
chr1 (225-301)||(15014116-15014192)
chr1 (231-295)||(46265566-46265630)
chr1 (159-254)||(3576984-3577079)
chr1 (113-168)||(19507938-19507993)
chr1 (155-213)||(13645756-13645814)
chr1 (113-206)||(7840740-7840832)
chr1 (222-295)||(23916239-23916312)
chr1 (113-301)||(14578983-14579171)
chr1 (113-301)||(14770815-14771003)
chr1 (231-295)||(15662408-15662472)
chr1 (231-295)||(42916724-42916788)
chr1 (125-181)||(48152634-48152690)
chr1 (142-206)||(50445511-50445575)
chr1 (118-157)||(573323-573362)
chr1 (113-168)||(23915874-23915929)
chr1 (222-301)||(25125365-25125444)
chr1 (231-286)||(28005824-28005879)
chr1 (113-295)||(35810110-35810291)
chr1 (223-271)||(38061572-38061620)
chr1 (158-206)||(44595869-44595917)
[»] scaffold0316 (1 HSPs)
scaffold0316 (113-270)||(18710-18867)
[»] chr8 (13 HSPs)
chr8 (121-207)||(17865720-17865806)
chr8 (149-265)||(11161114-11161230)
chr8 (113-301)||(22563263-22563446)
chr8 (159-213)||(22930889-22930943)
chr8 (113-254)||(9413263-9413404)
chr8 (113-204)||(43966887-43966973)
chr8 (113-177)||(27189629-27189693)
chr8 (231-275)||(1091197-1091241)
chr8 (108-203)||(13784205-13784295)
chr8 (158-205)||(15211953-15212000)
chr8 (158-281)||(25731826-25731949)
chr8 (113-187)||(32740279-32740353)
chr8 (119-183)||(33280708-33280772)
[»] scaffold0106 (1 HSPs)
scaffold0106 (115-206)||(26495-26586)
[»] scaffold0658 (1 HSPs)
scaffold0658 (113-209)||(6437-6533)
[»] scaffold0444 (1 HSPs)
scaffold0444 (158-203)||(1463-1508)
[»] scaffold0224 (1 HSPs)
scaffold0224 (231-295)||(7918-7982)
[»] scaffold0043 (1 HSPs)
scaffold0043 (113-269)||(16492-16647)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 43385703 - 43386039
Alignment:
Q  18 aacaaaacaaaataacgggagaataaacagggtcaatatgttttagacctaactcattccaagcatgggattcgttgtggaccttatcgcgcaaataggg 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43385703 aacaaaaaaaaataacgggagaataaacagggtcaatatgttttagacctaactcattccaagcatgggattcgttgtggtccttatcgcgcaaataggg 43385802  T
Q  118 ctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac-nnn 216  Q
    ||||||||| | ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        
T  43385803 ctggaaatgtgccgagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgacacaaactttt 43385902  T
Q  217 nnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacattactcaacagttaaa 316  Q
         ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  43385903 tttttcagcttgagttcggctcgtttaaagttcacgaatagttcagttcggctcgataggttcagttcgtttattcaaatcacattactcaacaattaaa 43386002  T
Q  317 nnnnnnngtcaaaatttatagatctttgacttatatt 353  Q
           ||||||||||||||||||||||||||||||    
T  43386003 tttttttgtcaaaatttatagatctttgacttatatt 43386039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 110 - 288
Target Start/End: Complemental strand, 32157528 - 32157350
Alignment:
Q  110 aaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    ||||||||||||||||||||||||| ||    |||  ||||| | ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  32157528 aaatagggctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacac 32157429  T
Q  210 aaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
     |||        |||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||||| |||||||    
T  32157428 gaactattttttcagctcgagttcggctcgtttaaagttcacgaccagttcggttcggctcgttagattcagttcgttt 32157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 352
Target Start/End: Original strand, 15931975 - 15932177
Alignment:
Q  151 gagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttca 250  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||| |||||||| |||| |||        |  ||||| ||||| ||||||||||||||    
T  15931975 gagttcgactcgactcgataagaattggttcagcttgaaactcggttcgagttcaacacgaactcttttttcgactcgagttcggttcgtttaaagttca 15932074  T
Q  251 cgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacattactcaacagttaaannnnnnngtcaaaatttatagatc-tttgactta 349  Q
    |||| ||||| |||||||||||||| |||| ||||||| |||||||||||| |||||| ||||| |       ||||||||||||||||| |||||||||    
T  15932075 cgaacagttcggttcggctcgataggttcagttcgtttgttcaaatcacataactcaaaagttagatttttttgtcaaaatttatagatcttttgactta 15932174  T
Q  350 tat 352  Q
    |||    
T  15932175 tat 15932177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 113 - 294
Target Start/End: Original strand, 27905480 - 27905661
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | ||||  |||||| ||||||||||| ||||||||||||||| || || ||||||||||||||||||||| ||    
T  27905480 tagggctggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggcacgaaactcggctcgagttcgacacgaa 27905579  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaa 294  Q
    |        |||| |||||||||||||||||||||||||||| ||||| |||||||||| ||| |||| |||| || |||||    
T  27905580 ctattttttcagcccgaattcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcggttgttcaa 27905661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 18879654 - 18879792
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaag 246  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| |||        |||||||| |||||||| |||||||    
T  18879654 gtctgagttcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaactattttttcagctcgagttcggctcatttaaag 18879753  T
Q  247 ttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||| ||||| |||||||||| ||| |||| ||||    
T  18879754 ttcacgaacagttcggttcggctcgttaggttcagttcg 18879792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 3805513 - 3805417
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    |||||||||||||||||||||| ||  | |||  ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  3805513 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacac 3805417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 19283724 - 19283631
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    ||||||||||||||||||||||||| || ||||  |||||| ||| |||||||||||||||||||||| |||||| |||||| |||||||||||    
T  19283724 tagggctggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttcga 19283631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 11136804 - 11136712
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    ||||||||||||||||||||||| ||||| |||| ||||||  ||||||||| ||||||||||| ||||| ||||| |||||| |||||||||    
T  11136804 atagggctggaaatgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactcgactcgagttc 11136712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 1841115 - 1840976
Alignment:
Q  115 gggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacn 214  Q
    |||||||||||||||||||| ||  | |||  ||||||| ||| ||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||     
T  1841115 gggctggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttcgatacgaacc 1841016  T
Q  215 nnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
            | ||||| ||||||||||||||||||||||||    
T  1841015 ctttttttaactcgagttcggctcgtttaaagttcacgaa 1840976  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 26217423 - 26217514
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    ||||| |||||||||||||||| ||||| |||| ||||||| |||| ||||||| |||||||||||||| ||||| |||||| |||||||||    
T  26217423 tagggttggaaatgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactcgactcgagttc 26217514  T

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Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 26299446 - 26299604
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| || ||||||||||||| ||||| |||| ||||||| |||  |||||||||||||||||||||| ||||| |||||| |||||||||||    ||    
T  26299446 tagggttgaaaatgagtcgagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagtgaa 26299545  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |         | ||||| |||||||||||||||||||||||| ||||| |||| |||||    
T  26299546 cctttttttaaactcgagttcggctcgtttaaagttcacgaacagttcggttcagctcg 26299604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 27451130 - 27450972
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||||| |||  ||||||| |||  |||||||||||||||||||||| ||||| |||||  |||||||||||  | ||    
T  27451130 tagggttggaaatgagtcgagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcgaaactcaactcgagttcgaagcgaa 27451031  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |         | ||||| |||||||||||||||||||||||| ||||| |||| |||||    
T  27451030 catttttttaaactcgagttcggctcgtttaaagttcacgaacagttcggttcagctcg 27450972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 34720203 - 34720045
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||||| |||  ||| ||| |||  |||||||||||||||||||||| | ||| |||||| |||||||||||  | ||    
T  34720203 tagggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagcgaa 34720104  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |         ||||||| ||| |||||||||||||||||||| ||||| |||| |||||    
T  34720103 cttttttttaagctcgagttcagctcgtttaaagttcacgaacagttcggttcagctcg 34720045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 34724179 - 34724021
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||||| |||  ||| ||| |||  |||||||||||||||||||||||| ||| |||||| |||||||||||  | ||    
T  34724179 tagggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcagttcgaaactcgactcgagttcgaagcgaa 34724080  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |         ||||||| ||| ||||||||| |||||||||| ||||| |||| |||||    
T  34724079 cctttttttaagctcgagttcagctcgtttagagttcacgaacagttcggttcagctcg 34724021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 306
Target Start/End: Original strand, 20188349 - 20188543
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaa 211  Q
    ||||||||||||||||||| ||| || || |||| ||||||||||| ||||||||  |||||||| |||| | ||| | ||||| ||||||| ||||| |    
T  20188349 atagggctggaaatgagtcaagtcgaatcgaacttgtctgagttcgactcgactcattaagaatttgttcggttcgaatctcggatcgagtttgacacga 20188448  T
Q  212 acnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacattactc 306  Q
    ||        || ||| | ||| |||||||||||||||||||| ||||  |||||||||  ||  ||| |||||||| |||||| ||||| ||||    
T  20188449 actttttttccaactcaagttccgctcgtttaaagttcacgaacagtttggttcggctcattaagttcgattcgtttgttcaaagcacataactc 20188543  T

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Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 14501487 - 14501398
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgag 201  Q
    |||||| ||||||||||||| || ||||| || | ||||||| ||||||||||||||||||||| ||||| ||||| |||||| ||||||    
T  14501487 atagggttggaaatgagtcgcgtcgagtcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcgaaactcgactcgag 14501398  T

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Target: chr5; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 34856946 - 34857039
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||| ||||||||||||||||| ||||| ||   |||||||||||  |||||||||||||||||||||| ||||| |||| | |||||||||||    
T  34856946 taggactggaaatgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcgaaacttgactcgagttcga 34857039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 4984100 - 4983965
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||||||||||| |||||||| ||     ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||| | || ||    
T  4984100 tagggctggaaataagtcgagttga-----acttgtctgagctcggctcgactcgataagaattggttcagcttgaaactcgactcgagttcaaaacgaa 4984006  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |          |||||| |||||||||||||||||||||||    
T  4984005 cctttttttgggctcgagttcggctcgtttaaagttcacga 4983965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 285
Target Start/End: Original strand, 22921437 - 22921603
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaa 211  Q
    ||||||||||||||||||||||| || || | |  ||||||| ||| ||| ||||||||| ||||||||| |||||       |||||| |||||||| |    
T  22921437 atagggctggaaatgagtcgagtcgaatcgagcctgtctgagctcgactccactcgataaaaattggttctgctcg-------gctcgaattcgacacga 22921529  T
Q  212 acnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    ||        || ||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  22921530 actattttttcatctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 22921603  T

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Target: chr5; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 29322063 - 29322223
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  | ||||| |||||||||||||||||||||||||            |||||||||||||||||| ||    
T  29322063 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggt------------tcggctcgagttcgacacgaa 29322150  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| ||||||||||||||||||||||||  |||| |||||||||| ||| |||| ||||    
T  29322151 ctattttttcagctcgagttcggctcgtttaaagttcacgaactgttcggttcggctcgttaggttcagttcg 29322223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 39408766 - 39408877
Alignment:
Q  160 tcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagtt 259  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||  | |||         ||||||| |||||||||||||||||||||||| ||||    
T  39408766 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagcgaacttttttttaagctcgagttcggctcgtttaaagttcacgaacagtt 39408865  T
Q  260 cagttcggctcg 271  Q
    | |||| |||||    
T  39408866 cggttcagctcg 39408877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 26297905 - 26298063
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||| ||||||||||| |  |||| |||  || |||| |||  |||||||||||||||||||||| ||||| ||||||  ||||||||||  | ||    
T  26297905 tagggctgaaaatgagtcgaatcaagtcaaacctgtgtgagctcgattcgactcgataagaattggttcggctcgaaactcgattcgagttcgaagcgaa 26298004  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |         | ||||| |||||||||||||||||||||||||||||| |||| |||||    
T  26298005 cctttttttaaactcgagttcggctcgtttaaagttcacgaatagttcggttcagctcg 26298063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 1224567 - 1224752
Alignment:
Q  116 ggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnn 215  Q
    ||||| ||||||||||| | || || |||  |||| || |||||||||||| |||||| || | ||  |||| |||||| |||||||||||||| |||      
T  1224567 ggctgaaaatgagtcgaatcgaatcgaacctgtctaagctcggctcgactcaataagattttgctcgactcgaaactcgactcgagttcgacacgaactc 1224666  T
Q  216 nnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
          | |||||| |||| ||||||||| ||||||||| ||||| |||||||||| ||| |||| || ||||  |||||||||||    
T  1224667 tttattccgctcgagttcgactcgtttaaggttcacgaacagttcggttcggctcgttaggttcagtttgtttgctcaaatcacat 1224752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 19715791 - 19715919
Alignment:
Q  131 gagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaa 230  Q
    |||||||||| |||| ||||||| |||  |||||||||||| ||||||||| ||||| |||||| |||||||||||  | |||         | |||||     
T  19715791 gagtagagtcgaacttgtctgagctcgattcgactcgataataattggttcggctcgaaactcgactcgagttcgaagcgaacctttttta-aactcgag 19715889  T
Q  231 ttcggctcgtttaaagttcacgaatagttc 260  Q
    ||||||||||||||||||||||||||||||    
T  19715890 ttcggctcgtttaaagttcacgaatagttc 19715919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 10493379 - 10493514
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||  |||||||     |||||||||||||||| |||||| ||||| |||||| ||||||||||| || ||    
T  10493379 tagggctggaaatgagtcgagtcgaatcgaacctgtctgag-----ctcgactcgataagaaatggttcggctcgaaactcgactcgagttcgaaacgaa 10493473  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |        || ||| | |||||||||||||||||||||||    
T  10493474 cctttttttcaactcaagttcggctcgtttaaagttcacga 10493514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 5385229 - 5385062
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || ||||  |||||| |||  |||| ||||| | |||| |||| ||||| |||| | ||||||||| |||| ||    
T  5385229 tagggctggaaatgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcgaaacttgactcgagttcaacacgaa 5385130  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
    |         ||||||| |||| ||||||||||||||||||| | ||| |||||||||  ||||||||    
T  5385129 ctctttttttagctcgagttcgactcgtttaaagttcacgaacaattcggttcggctcattagattca 5385062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 38523288 - 38523225
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||| |||||||||||||||||||||||| ||||  |||||||||| ||| |||| ||||    
T  38523288 cagctcgagttcggctcgtttaaagttcacgaacagtttggttcggctcgttaggttcagttcg 38523225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 39407028 - 39407139
Alignment:
Q  160 tcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagtt 259  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||||    |||         ||||||| |||||||||||||||||||||||| ||||    
T  39407028 tcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagtgaacttttttttaagctcgagttcggctcgtttaaagttcacgaacagtt 39407127  T
Q  260 cagttcggctcg 271  Q
    | |||| |||||    
T  39407128 cggttcagctcg 39407139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 20191265 - 20191192
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||| | ||||||||||||||||||||| || ||||  |||||||||  ||| |||||||||||| ||||||    
T  20191265 cagctcaagttcggctcgtttaaagttcacaaacagtttggttcggctcattaggttcaattcgtttgttcaaa 20191192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 27195428 - 27195564
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||     ||  ||||||| ||| |||||||| |||||||||||||| ||||| |||||  |||||||| || || ||    
T  27195428 tagggctggaaatgagtcgagtcga-----acatgtctgagctcgactcgactcaataagaattggttcggctcgaaactctactcgagtttgaaacgaa 27195522  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    |         | ||||| ||||||||||||||||||||||||    
T  27195523 ccttttctctaactcgagttcggctcgtttaaagttcacgaa 27195564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 28430594 - 28430642
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    ||||||||||||||||||| |||||||||  |||||| |||||||||||    
T  28430594 gctcgactcgataagaattagttcagctcaaaactcgactcgagttcga 28430642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 2675410 - 2675488
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||||| |||| ||||||||||||||||||| ||||  | |||||||  ||| |||||||||||| |||||| |||||    
T  2675410 cagctcgagttcgactcgtttaaagttcacgaacagtt-tggtcggctcattaggttcaattcgtttgttcaaagcacat 2675488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 34520226 - 34520291
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattgg 178  Q
    ||||||||||||||||| |||| || |  ||||| |||||| | | ||||||||||||||||||||    
T  34520226 tagggctggaaatgagttgagttgaattgaactcatctgagcttgactcgactcgataagaattgg 34520291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 113 - 316
Target Start/End: Complemental strand, 7539791 - 7539588
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  7539791 tagggctggaaatgagccgagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgactcgaa 7539692  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacattactcaacagt 312  Q
             |||||||| |||||||||||||||||| ||||| ||||| |||| ||||||||| |||| |||||||||||||||||| |||||||| |||    
T  7539691 tttttttttcagctcgagttcggctcgtttaaagtttacgaacagttcggttcagctcgataggttcagttcgtttattcaaatcacgttactcaaaagt 7539592  T
Q  313 taaa 316  Q
    ||||    
T  7539591 taaa 7539588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 666356 - 666184
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||| ||||||||||||||||| ||  | |||  ||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  666356 taggtctggaaatgagtcgagtcgaaccgaacatgtctgagctcggcttgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaa 666257  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||| | |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  666256 ctattttttcagctcaagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 666184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 36926409 - 36926581
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||    
T  36926409 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36926508  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        || ||||| |||||||| |||||| |||||||| |||||  ||||||||| ||| |||| ||||    
T  36926509 ctattttttcatctcgagttcggctcatttaaaattcacgaacagttcgattcggctcgttaggttcagttcg 36926581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 42071520 - 42071692
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||| ||||||||||||| ||  | |||  ||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||    
T  42071520 tagggctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataagaattggttcggctcgaaactcggctcgagttcgacacgaa 42071619  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| ||||| ||||| |||| ||| |||| ||||    
T  42071620 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcgactcgttaggttcagttcg 42071692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 43052282 - 43052454
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||||||||||| |||||||| ||  | |||  | ||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||    
T  43052282 tagggctggaaatcagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 43052381  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||| ||||||||||||||| |||||||||||||||| ||| |||| ||||    
T  43052382 ctattttttcagctcgagttcggctcatttaaagttcacgaacagttcagttcggctcgttaggttcagttcg 43052454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 5776705 - 5776533
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  | ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||    
T  5776705 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattagttcagctcgaaactcggctcgagttcgacaagaa 5776606  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| ||||||||||||||| |||||||| | ||| |||||||||| ||| |||| ||||    
T  5776605 ctattttttcagctcgagttcggctcgtttaaaattcacgaacaattcggttcggctcgttaggttcagttcg 5776533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 285
Target Start/End: Original strand, 26215721 - 26215889
Alignment:
Q  117 gctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnn 216  Q
    |||||||||||||||||| ||  | |||  | ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||       
T  26215721 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactat 26215820  T
Q  217 nnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
         || ||||| |||||||||||||||||||||||| ||||| ||| | |||| ||| |||| ||||    
T  26215821 tttttcaactcgagttcggctcgtttaaagttcacgaacagttcggtttgactcgttaggttcagttcg 26215889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 3931455 - 3931316
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac-nnnnnnnncagctcgaattcggctcgtttaaa 245  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||         |||||||| ||| |||||||||||    
T  3931455 gtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttttttcagctcgagttcagctcgtttaaa 3931356  T
Q  246 gttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    ||||||||| ||||| |||||||||| ||| |||| ||||    
T  3931355 gttcacgaacagttcggttcggctcgttaggttcagttcg 3931316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 113 - 288
Target Start/End: Original strand, 7443829 - 7444004
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||  | ||   ||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  7443829 tagggttggaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataagaattggttcggttcgaaactcggctcgagttcgacacaaa 7443928  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
    |        |||||||| ||| |||||||||| ||||||||| ||||| ||| |||| | ||| |||| |||||||    
T  7443929 ctattttttcagctcgagttcagctcgtttaatgttcacgaacagttcggtttggcttgttaggttcagttcgttt 7444004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 37333697 - 37333870
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||  | |||  | ||||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||| |  ||    
T  37333697 tagggttggaaatgagtcgagtcgaaccgaacctgcctgagcttggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgatatgaa 37333796  T
Q  213 c-nnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |         |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  37333797 ctatttttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 37333870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 287
Target Start/End: Complemental strand, 223083 - 222909
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| ||||||||||| |||| |  || |||  ||||||| | ||||||||||||||| |||| | || ||||| |||||| |||||||||||||| ||    
T  223083 tagggttggaaatgagttgagtcggatcgaacctgtctgagcttggctcgactcgataaaaatttgctcggctcgaaactcgactcgagttcgacacgaa 222984  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
    |        ||||||||||| | |||||||||| |||||||| ||||| |||||||||| ||| |||||||||||    
T  222983 ctcttttttcagctcgaatttgactcgtttaaaattcacgaacagttcggttcggctcgttaggttcaattcgtt 222909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 17026138 - 17026048
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||| ||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||||||||||||||| ||||| |||||| ||||||||    
T  17026138 taggactggaaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagtt 17026048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 20260071 - 20259974
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    |||||||||| |||||||||||  || || || ||||||||| ||| |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  20260071 atagggctggtaatgagtcgagccgactcgaattcgtctgagctcgactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacac 20259974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 285
Target Start/End: Original strand, 388425 - 388587
Alignment:
Q  111 aatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacaca 210  Q
    |||||||||||||||||||||||| ||  | |||| | ||||| |||| ||||||||||||||||||||            ||||||||||||||||||     
T  388425 aatagggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggt------------tcggctcgagttcgacacg 388512  T
Q  211 aacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  388513 aactattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 388587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 8110777 - 8110906
Alignment:
Q  131 gagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaa 230  Q
    |||| ||||| |||||||||||| | ||||||||| ||||||||||| | ||||| | ||||||||||||||||||||| |||        ||||||||     
T  8110777 gagttgagtcgaactcgtctgagcttggctcgacttgataagaattgttccagcttgaaactcggctcgagttcgacacgaactcttttttcagctcgag 8110876  T
Q  231 ttcggctcgtttaaagttcacgaatagttc 260  Q
    ||| ||||||||||||||||| || |||||    
T  8110877 ttcagctcgtttaaagttcacaaacagttc 8110906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 20400173 - 20400343
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||| |||||  |||  |||||  ||||| ||| ||||||||| ||| | ||||||||||| | ||||||| ||||||||||||||||    
T  20400173 tagggttggaaatgagccgagtctagttgaactcacctgagctcgactcgactcggtaatatttggttcagcttgaaactcggttcgagttcgacacaaa 20400272  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattc 284  Q
    |         ||||||| || ||||||||||||||||||||||||||| ||| | |||| ||| ||||||||    
T  20400273 ccatttttt-agctcgagtttggctcgtttaaagttcacgaatagttcggtttgactcgttaggttcaattc 20400343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 49035205 - 49035017
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||| | || || |||  ||||||| ||||||||||| ||||||| || | || ||||| |||||| |||||||| ||||| ||    
T  49035205 tagggctggaaatgagtcgaatcgaatcaaacatgtctgagctcggctcgacttgataagattttgctcggctcgaaactcgactcgagtttgacacgaa 49035106  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |         ||||||| |||| ||| ||||| ||||||||| |||||  ||||||||| ||| |||| || ||||  |||||||||||    
T  49035105 ctctttttttagctcgagttcgactcttttaaggttcacgaacagttcgattcggctcgttaggttcagtttgtttgctcaaatcacat 49035017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 281
Target Start/End: Complemental strand, 18250769 - 18250618
Alignment:
Q  130 cgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcga 229  Q
    ||||| ||||| |||| || |||| ||| ||||||||||||||||||||||| ||||| |||| | |||||||| || || |||         | |||||    
T  18250769 cgagtcgagtcaaacttgtttgagctcgactcgactcgataagaattggttcggctcgaaacttgactcgagtttgaaacgaaccttttctctaactcga 18250670  T
Q  230 attcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaa 281  Q
     |||||||||||||||||||||||| ||||| ||||| |||| ||| |||||    
T  18250669 gttcggctcgtttaaagttcacgaacagttcggttcgactcgttaggttcaa 18250618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 266
Target Start/End: Complemental strand, 5795634 - 5795493
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||| ||||||||||||||||| || || |||  | ||||| |||||||||||||||||||||||||            |||||||||||||||||| ||    
T  5795634 taggactggaaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggt------------tcggctcgagttcgacacgaa 5795547  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcg 266  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||    
T  5795546 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcg 5795493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 15433629 - 15433789
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  | ||||| |||||| ||||||||||||||||||||            |||||||||||||||| ||    
T  15433629 tagggctggaaatgagtcgagtcgaaccaaacctgcctgagctcggcttgactcgataagaattggttc------------ggctcgagttcgacacgaa 15433716  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||| ||| ||||| |||||||||| ||| |||| ||||    
T  15433717 ctattttttcagctcgagttcggctcgtttaaagttcatgaacagttcggttcggctcgttaggttcagttcg 15433789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 8390261 - 8390103
Alignment:
Q  130 cgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcga 229  Q
    ||||| ||||| | || ||||||| ||| ||||||||||||||||| || |||||||| |||||  ||||| ||||| ||||||         |||||||    
T  8390261 cgagtcgagtcgaccttgtctgagctcgactcgactcgataagaatcggctcagctcgaaactcaactcgaattcgatacaaacctttttcttagctcga 8390162  T
Q  230 attcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
     || ||||||||||| ||||||||| |  || |||||||||| ||| ||||| ||||||    
T  8390161 gtttggctcgtttaatgttcacgaacaactcggttcggctcgttaggttcaactcgttt 8390103  T

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Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 45054811 - 45054933
Alignment:
Q  131 gagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaa 230  Q
    |||| ||||| |||| ||||||| | ||||||||||||||||||||||||| ||| | |||||| ||||||||| | || |||          ||||||     
T  45054811 gagtcgagtcgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgag 45054910  T
Q  231 ttcggctcgtttaaagttcacga 253  Q
    |||||||||||||||||||||||    
T  45054911 ttcggctcgtttaaagttcacga 45054933  T

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Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 31490697 - 31490770
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctc 186  Q
    ||||||| |||||||||||||| ||||| ||||| |||||| ||  ||| ||| ||||||||||||||||||||    
T  31490697 tagggctagaaatgagtcgagtcgagtcgaactcatctgagctctactcaacttgataagaattggttcagctc 31490770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 28950336 - 28950273
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||| |||| ||||    
T  28950336 cagctcgagttcggctcgtttaaagttcacgaacagttcggttcagctcgttaggttcagttcg 28950273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 45174636 - 45174711
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcg 187  Q
    ||||||||| ||||||||||||| ||  | |||  ||||||| |||||||||||| |||||||||||||| |||||    
T  45174636 atagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctcg 45174711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 28950433 - 28950360
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcg 187  Q
    |||||||||||||||||||||| ||  | |||| | ||||| ||||||| ||||||||||||||||||| |||||    
T  28950433 tagggctggaaatgagtcgagtcgaaccaaact-gcctgagctcggctcaactcgataagaattggttcggctcg 28950360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 3941795 - 3941859
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||||||||||||||||||||| ||||  |||||||||  ||| |||| ||||||| ||||||    
T  3941795 ttcggctcgtttaaagttcacgaacagtttggttcggctcattaggttcatttcgtttgttcaaa 3941859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 286
Target Start/End: Complemental strand, 18740954 - 18740826
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||||||||||||||||| ||| | || ||||||| |||||||| || |||||          | ||||| |||| ||||||||||||||||||| |     
T  18740954 gctcgactcgataagaattgattcggttcataactcgactcgagtttgaaacaaatctttttttaaactcgagttcgactcgtttaaagttcacgaacaa 18740855  T
Q  258 ttcagttcggctcgatagattcaattcgt 286  Q
     || |||||||||| ||| ||||||||||    
T  18740854 ctcggttcggctcgttaggttcaattcgt 18740826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 22074610 - 22074654
Alignment:
Q  162 gactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||    
T  22074610 gactcgataagaattggttcggctcgaaactcgactcgagttcga 22074654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 27232430 - 27232366
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||||||||||||||||||||| | ||  |||||||||  ||| |||||||||||| ||||||    
T  27232430 ttcggctcgtttaaagttcacgaacaatttggttcggctcattaggttcaattcgtttgttcaaa 27232366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 30918930 - 30919010
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactc 193  Q
    ||||||||||||||| |||||| ||  | |||   |||||| ||| ||| ||||||||||||||||||||||||| |||||    
T  30918930 tagggctggaaatgaatcgagtcgaaccgaacctatctgagctcgactcaactcgataagaattggttcagctcgaaactc 30919010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 37106150 - 37106210
Alignment:
Q  117 gctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattg 177  Q
    |||||||||||||||||| || || |||  ||||||||||| ||||||||| |||||||||    
T  37106150 gctggaaatgagtcgagtcgaatcgaacctgtctgagttcgactcgactcgttaagaattg 37106210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 11596521 - 11596486
Alignment:
Q  159 ctcgactcgataagaattggttcagctcgtaactcg 194  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11596521 ctcgactcgataagaattggttcagctcgaaactcg 11596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 42012314 - 42012255
Alignment:
Q  117 gctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaatt 176  Q
    |||||||||||||||||| || || |||| ||||||| ||| ||||||||| ||||||||    
T  42012314 gctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcgttaagaatt 42012255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 35544191 - 35544137
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||||||||||||||||||| || || ||| |||||| ||| |||||||||    
T  35544191 ttcggctcgtttaaagttcacgaacagctcggtttggctcgttaggttcaattcg 35544137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 45174736 - 45174789
Alignment:
Q  235 gctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
    |||||||||||||||||||| | ||| |||||||||| ||| |||| |||||||    
T  45174736 gctcgtttaaagttcacgaacaattcggttcggctcgttaggttcagttcgttt 45174789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 10618139 - 10618195
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
    |||||||||||||||||||||||| |  |||||||| |||| ||| ||||| |||||    
T  10618139 ttcggctcgtttaaagttcacgaacaactcagttcgcctcgttaggttcaactcgtt 10618195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 17608138 - 17608174
Alignment:
Q  223 agctcgaattcggctcgtttaaagttcacgaatagtt 259  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  17608138 agctcgaattcggctcgcttaaagttcacgaacagtt 17608174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 32239580 - 32239644
Alignment:
Q  237 tcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    ||||||||||||||| || ||||  ||| |||||  |||||||||||||||| |||||| |||||    
T  32239580 tcgtttaaagttcactaacagtttggtttggctcattagattcaattcgtttgttcaaagcacat 32239644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 37106265 - 37106329
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||||| ||||||||||||||| ||||  |||||||||  ||| || ||||||||| ||||||    
T  37106265 ttcggctcatttaaagttcacgaacagtttggttcggctcattaggttaaattcgtttgttcaaa 37106329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 300
Target Start/End: Complemental strand, 39943840 - 39943685
Alignment:
Q  145 tcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaa 244  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||        ||||| || ||||||| ||||||    
T  39943840 tcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagtttgacacgaacttttttttcagcttgagttcggcttgtttaa 39943741  T
Q  245 agttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcaca 300  Q
    |||||||| | |||||||||||||||||||| |||| |||||||||||||||||||    
T  39943740 agttcacgtacagttcagttcggctcgataggttcatttcgtttattcaaatcaca 39943685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 288
Target Start/End: Complemental strand, 39471219 - 39471044
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  ||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||    
T  39471219 tagggctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 39471120  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
    |        |||||||| ||| |||||||||||||||||||| |||||  ||||||||| ||| || | |||||||    
T  39471119 ctattttttcagctcgagttcagctcgtttaaagttcacgaacagttcgattcggctcgttaggtttagttcgttt 39471044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 7029135 - 7029231
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    ||||||||||||||||||||||  |||| ||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  7029135 tagggctggaaatgagtcgagtccagtcgaactcatctgagttcgactcgactcgataagaatttgttcagctcgaaactcggctcgagttcgacac 7029231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 5418042 - 5418134
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||    
T  5418042 atagggctggaaatgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactcgactcgagttc 5418134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 32688593 - 32688731
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaag 246  Q
    ||||||| ||||||||||||||||| ||||||||| ||||| ||||| ||||||||| ||||  |||        |||||||| ||||||||||||||||    
T  32688593 gtctgagctcggctcgactcgataaaaattggttcggctcgaaactcagctcgagtttgacatgaactattttttcagctcgagttcggctcgtttaaag 32688692  T
Q  247 ttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||| ||||| |||||||||| ||| |||| ||||    
T  32688693 ttcacgaacagttcggttcggctcgttaggttcagttcg 32688731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 116 - 287
Target Start/End: Complemental strand, 38644361 - 38644191
Alignment:
Q  116 ggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnn 215  Q
    |||||||||||||| |||| ||  | |||  ||||||| ||||||||||| |||||||||| |||| ||||  |||||| |||||||||||||| |||      
T  38644361 ggctggaaatgagtggagtcgaaccgaacctgtctgagctcggctcgactagataagaatttgttcggctcaaaactcgactcgagttcgacacgaactt 38644262  T
Q  216 nnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
          ||||||||||||| || |||||||||||||||||||||| ||||| |||| ||| |||||||||||    
T  38644261 ttttt-cagctcgaattcgacttgtttaaagttcacgaatagttcggttcgactcgttaggttcaattcgtt 38644191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 287
Target Start/End: Original strand, 52198776 - 52198950
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  ||||||| |||||||||||||||| ||||  | || ||||| |||||| |||||||||||||| ||    
T  52198776 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgatatgaatctgctcggctcgaaactcgactcgagttcgacacgaa 52198875  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
    |        ||||||||||| | |||||||||||||||| || ||||  |||||||||| ||| |||||||||||    
T  52198876 ctcttttttcagctcgaatttgactcgtttaaagttcacaaacagtttggttcggctcgttaggttcaattcgtt 52198950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 266
Target Start/End: Complemental strand, 46294377 - 46294224
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||| | |||||||||||||||| ||| |||||| |||||| | ||||| ||    
T  46294377 tagggctggaaatgagtcgagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttcagttcgaaactcgactcgagattgacacgaa 46294278  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcg 266  Q
    |         ||||||| ||| |||||||||| |||| |||| ||||| |||||    
T  46294277 ctctttttttagctcgagttcagctcgtttaaggttcgcgaacagttcggttcg 46294224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 33895913 - 33896057
Alignment:
Q  110 aaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    |||||||| || ||||||||| ||| ||  | |||| ||||||| ||| |||||||| ||||||| |||||||||||  |||||| ||||||||||||||    
T  33895913 aaatagggttgaaaatgagtcaagtcgaaccgaacttgtctgagctcgactcgactcaataagaaatggttcagctccaaactcgactcgagttcgacac 33896012  T
Q  210 aaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
     |||         ||||||||||||||||||||||||||||||||    
T  33896013 gaaccttttttttagctcgaattcggctcgtttaaagttcacgaa 33896057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 25252873 - 25253015
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaa 211  Q
    |||||||| |||||||||||||| ||||| |||  ||||||| ||  ||||||||||||||||||||||| ||||  |||||| ||||||||| | || |    
T  25252873 atagggctagaaatgagtcgagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctcaaaactcgactcgagttcaatacga 25252972  T
Q  212 acnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    ||         ||||||| ||||||||||||||||||||||||    
T  25252973 actttttgttaagctcgagttcggctcgtttaaagttcacgaa 25253015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 39133812 - 39133877
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  39133812 gtctgagctcagctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaa 39133877  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 20407890 - 20407797
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||| ||| ||||||||||||| ||||| |||  || |||| |||||||||||||||||| |||||||| ||||| |||||| |||||||||||    
T  20407890 taggactgaaaatgagtcgagtcgagtccaacgtgtttgagctcggctcgactcgataagtattggttcggctcgaaactcgactcgagttcga 20407797  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 30740732 - 30740872
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||| ||||||| |   || ||||||||||||| |||||  ||||| |||||| |||||||||||||| ||    
T  30740732 tagggctggaaatgagtcgagtcgaaccgaacttgtctgagctttacttgactcgataagaaatggtttggctcgaaactcgactcgagttcgacacgaa 30740831  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |         ||||||| |||||||||||||||||||||||    
T  30740832 ccttttttttagctcgagttcggctcgtttaaagttcacga 30740872  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 27040684 - 27040593
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    |||||||||||||||||||||| ||||| |||| || |||| ||  ||||||||| ||||| ||||||| ||||| |||||| |||||||||    
T  27040684 tagggctggaaatgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactcgactcgagttc 27040593  T

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Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 54394084 - 54394005
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||| | |||||||||||||||||||||||| |||| ||||||||||  ||| |||||||||||| |||||| |||||    
T  54394084 cagctcaagttcggctcgtttaaagttcacgaacagtttagttcggctcattaggttcaattcgtttgttcaaagcacat 54394005  T

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Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 295
Target Start/End: Complemental strand, 53530296 - 53530115
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||| | || || |||  ||||||| ||| ||||||||| |||||||||| |||| | | | ||||| |||||||  |||||||    
T  53530296 tagggctggaaatgagtcgaatcgaatcgaacatgtctgagctcgactcgactcgttaagaattggctcagtttgaacctcggttcgagtttaacacaaa 53530197  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |        |||||| | |||||||||||||||||||||||| ||||  |||| ||||  || |||||||| |||| ||||||    
T  53530196 c-tttttttcagctcaagttcggctcgtttaaagttcacgaacagtttggttcagctcattaaattcaatttgtttgttcaaa 53530115  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 54433019 - 54432945
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcg 187  Q
    ||||||||||||||||||||||  |||| ||   ||||||| ||| ||||||||||||||||||||||| |||||    
T  54433019 tagggctggaaatgagtcgagtcaagtcgaatatgtctgagctcgactcgactcgataagaattggttcggctcg 54432945  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 40942902 - 40942986
Alignment:
Q  115 gggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    |||||||||||||||||||| || |||     ||||||| ||| ||| |||||||||||||||||||  |||| ||||||||||||||||    
T  40942902 gggctggaaatgagtcgagtcgaatct-----gtctgagctcgactcaactcgataagaattggttcgactcgaaactcggctcgagttc 40942986  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 20661675 - 20661775
Alignment:
Q  114 agggctggaaatgagtcgagtagagtctaactcgtctgagttcggctc-gactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||||||||||||||| ||| || || ||||| |||||| ||| ||| |||||||||| ||||| ||||||||| |||||| || ||||| || |||||    
T  20661675 agggctggaaatgagtccagtcgattcaaactcatctgagctcgactctgactcgataaaaattgattcagctcgaaactcgacttgagtttgatacaaa 20661774  T
Q  213 c 213  Q
    |    
T  20661775 c 20661775  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 41609314 - 41609382
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttc 181  Q
    |||||||||||||||||||||| ||  | |||  | ||||| |||||||||||||||||||||||||||    
T  41609314 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttc 41609382  T

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Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 33439274 - 33439195
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||| | |||| ||||||||||||||||||| ||||  |||||||||  ||| |||||||||||| |||||| |||||    
T  33439274 cagctcaagttcgactcgtttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaagcacat 33439195  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 23206967 - 23206905
Alignment:
Q  223 agctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| |||| ||| |||| ||||    
T  23206967 agctcgagttcggctcgtttaaagttcacgaacagttcggttcgactcgttaggttcagttcg 23206905  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 19561547 - 19561447
Alignment:
Q  108 gcaaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgac 207  Q
    |||| |||||||||||||||||||||| ||||  || ||||||||     ||||||||||||||||||| ||| || ||  ||||||  ||||||||||     
T  19561547 gcaattagggctggaaatgagtcgagtcgagttgaattcgtctga-----gctcgactcgataagaattagtttagttcaaaactcgattcgagttcgat 19561453  T
Q  208 acaaac 213  Q
    ||||||    
T  19561452 acaaac 19561447  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 9505935 - 9505881
Alignment:
Q  159 ctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac 213  Q
    ||||||||||||||||||| ||| ||||| |||||  ||||||||||| ||||||    
T  9505935 ctcgactcgataagaattgattcggctcgaaactcaactcgagttcgatacaaac 9505881  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 54394181 - 54394116
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattgg 178  Q
    ||||| |||||||||||||||| || || |||  ||||||||||  ||||||||| ||||||||||    
T  54394181 tagggttggaaatgagtcgagtcgaatcgaacctgtctgagttcaactcgactcgttaagaattgg 54394116  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 9469428 - 9469599
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||    
T  9469428 tagggctggaaatgagtcgagtcga-tcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 9469526  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| ||||| |||||||||||||||||| |||||  ||||||||| ||| |||| ||||    
T  9469527 ctattttttcagctcgagttcggatcgtttaaagttcacgaacagttcgattcggctcgttaggttcagttcg 9469599  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 19850132 - 19850304
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  ||||||| |||||||||||||||||  |||||||| ||||| ||||||||||||||||||||| ||    
T  19850132 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaacattggttcggctcgaaactcggctcgagttcgacacgaa 19850231  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  19850232 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 19850304  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 49820378 - 49820550
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||| |||||||||| |||||| || || |||  | ||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||    
T  49820378 taggactggaaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacgaa 49820477  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||    
T  49820478 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcagttcggctcgttaggttcagttcg 49820550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 120 - 285
Target Start/End: Original strand, 50605462 - 50605627
Alignment:
Q  120 ggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnn 219  Q
    ||||||||||||||| ||  | |||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||          
T  50605462 ggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttt 50605561  T
Q  220 nncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
      |||||||| ||||||| |||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  50605562 ttcagctcgagttcggcttgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 50605627  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 21436307 - 21436479
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||  | |||  ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||  |    
T  21436307 tagggttggaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaattgattcggctcgaaactcggctcgaattcgacacgga 21436406  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| ||||| ||| |||||| ||| |||| ||||    
T  21436407 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggtttggctcgttaggttcagttcg 21436479  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 53369098 - 53369234
Alignment:
Q  149 ctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagtt 248  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||        |||||||| ||||||||||||||||||    
T  53369098 ctgagttcggctcaactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagtt 53369197  T
Q  249 cacgaatagttcagttcggctcgatagattcaattcg 285  Q
    ||||||  |||| |||||||||| ||| |||| ||||    
T  53369198 cacgaactgttcggttcggctcgttaggttcagttcg 53369234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 288
Target Start/End: Complemental strand, 4275682 - 4275507
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||| ||||| ||||| ||   | ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4275682 tagggttggaaatgagccgagtcgagtcgaatctgcctgagctcgactcgactcgataagaattggttcagctcgaaactcggctcgagttcgacacaaa 4275583  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
    |        ||||| |  |||| ||||||||||||||||||||||||| ||| |||||| | | |||| |||||||    
T  4275582 ctattttttcagcttgggttcgactcgtttaaagttcacgaatagttcggtttggctcgttgggttcagttcgttt 4275507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 43386533 - 43386704
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaa 211  Q
    ||||||||||||||||||||||| ||    |||  ||||||| ||| |||||||||||||||||| | || ||| | |||||| |||||||||||||| |    
T  43386533 atagggctggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacga 43386632  T
Q  212 acnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaatt 283  Q
    ||        ||||||||||||| ||||||||||||||||||| ||||| ||||| |||| ||| |||||||    
T  43386633 actcttttttcagctcgaattcgactcgtttaaagttcacgaacagttcggttcgactcgttaggttcaatt 43386704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 285
Target Start/End: Original strand, 48977002 - 48977176
Alignment:
Q  111 aatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacaca 210  Q
    |||||||||||||||||||||||| ||  | ||   | ||||  ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||     
T  48977002 aatagggctggaaatgagtcgagtcgaaccgaatctgcctgaactcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacg 48977101  T
Q  211 aacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||        |||||||| ||||||||||||||| |||||||| | ||  |||||||||| ||| |||| ||||    
T  48977102 aactattttttcagctcgagttcggctcgtttaaaattcacgaacaatttggttcggctcgttaggttcagttcg 48977176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 52705593 - 52705683
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||  |||||||    
T  52705593 tagggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgattcgagtt 52705683  T

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Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 7505426 - 7505513
Alignment:
Q  115 gggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagt 202  Q
    |||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||| ||| ||||| |||||| |||||||    
T  7505426 gggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactcgactcgagt 7505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 51994083 - 51994176
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||||||||||||||||||||| || || ||  |||||||| ||| ||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  51994083 tagggctggaaatgagtcgagtcgaatcgaatccgtctgagctcgactcgactcgttaagaattggttcagctcgaaactcgactcgagttcga 51994176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 36543365 - 36543469
Alignment:
Q  184 ctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaatt 283  Q
    |||| |||||||||||||||||||||||||        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||    
T  36543365 ctcgaaactcggctcgagttcgacacaaactattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagtt 36543464  T
Q  284 cgttt 288  Q
    |||||    
T  36543465 cgttt 36543469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 48732096 - 48732021
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgt 188  Q
    |||||||||||||||||||||| ||||  ||||||| |||| |||||||||||||||| |||||||||||||||||    
T  48732096 tagggctggaaatgagtcgagtcgagttgaactcgtgtgagctcggctcgactcgatatgaattggttcagctcgt 48732021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 287
Target Start/End: Original strand, 22183763 - 22183937
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||||| ||||||| |||||| ||  | |||  ||||||| |||| |||||| |||||||||| | || ||||  |||||| |||||||||||||| ||    
T  22183763 tagggctagaaatgaatcgagtcgaaccgaacctgtctgagctcggatcgacttgataagaatttgctcggctcaaaactcgactcgagttcgacacgaa 22183862  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
    |        ||||||||||| | ||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||    
T  22183863 ctcttttttcagctcgaatttgactcgtttaaagttcacgaacagttcggttccgctcgttaggttcaattcgtt 22183937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 25133932 - 25134026
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    ||||||||||||||||||||||| ||||| ||   ||||||| ||| ||||||||||||||||||||||| ||||| ||| ||| ||||||||||    
T  25133932 atagggctggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacccggttcgagttcga 25134026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 52813045 - 52813173
Alignment:
Q  159 ctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagt 258  Q
    |||||||||||||||||| | || ||| | |||||| |||||||||||||| |||        ||||||||||||| ||||||||||||||||||| |||    
T  52813045 ctcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaactcttttttcagctcgaattcgcctcgtttaaagttcacgaacagt 52813144  T
Q  259 tcagttcggctcgatagattcaattcgtt 287  Q
    || ||||| |||| | | |||||||||||    
T  52813145 tcggttcgactcgttcggttcaattcgtt 52813173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 44792921 - 44792761
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  || |||| |||||||||||||||||||||||||||            |||||||||||||||| ||    
T  44792921 tagggctggaaatgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataagaattggttc------------ggctcgagttcgacacgaa 44792834  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  44792833 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 44792761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 51409231 - 51409087
Alignment:
Q  136 gagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcgg 235  Q
    ||||| |||| ||||||| ||| |||||||||||||||||| |||| ||||| ||||||  ||||||||||||| |||         ||||||| ||||     
T  51409231 gagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacgaactatttttttagctcgagttcga 51409132  T
Q  236 ctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
    ||||||||||||||||| | ||||| | |||||||| ||| ||||    
T  51409131 ctcgtttaaagttcacgtacagttcggctcggctcgttaggttca 51409087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 40797154 - 40797245
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    ||||| |||||||||||||||| ||||| ||   ||||||| ||| ||||||||||||||||||||||| ||||| |||  |||||||||||    
T  40797154 taggggtggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacatggctcgagttc 40797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 45674401 - 45674464
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||    
T  45674401 cagctcgagttcggctcgtttaaagttcacgaatagttcggttcggctcgttaggttcagttcg 45674464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 22720747 - 22720825
Alignment:
Q  116 ggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcg 194  Q
    |||||||||||| |||||| || || |||| ||||||| ||||||| ||||||||||||||||||| ||||| ||||||    
T  22720747 ggctggaaatgaatcgagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactcg 22720825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 79760 - 79856
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    |||||||||||||||||||| | || || |||  |||| |||||||||||||||||||||| || | || | ||| |||||| ||||||||||||||    
T  79760 tagggctggaaatgagtcgaatcgaatcgaacctgtctaagttcggctcgactcgataagattttgctcggttcgaaactcgactcgagttcgacac 79856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 50241034 - 50240934
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||| |||||  | || ||| | |||||| ||| ||||||||| ||| ||||||||||||||| |||||  ||||||||||| |||||    
T  50241034 tagggctggaaatgagccgagtcaaatcgaacgcatctgagctcgactcgactcgttaaaaattggttcagctcgaaactctactcgagttcgaaacaaa 50240935  T
Q  213 c 213  Q
    |    
T  50240934 c 50240934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 28266839 - 28266717
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||||| |||||||||| | || ||||| |||||| |||||||||||||| |||         ||||||| |||| ||||||||||||||||||| ||    
T  28266839 gctcgactggataagaatttgctcggctcgaaactcgactcgagttcgacacgaactctttttttagctcgagttcgactcgtttaaagttcacgaacag 28266740  T
Q  258 ttcagttcggctcgatagattca 280  Q
    ||| ||||| |||| ||| ||||    
T  28266739 ttcggttcgactcgttaggttca 28266717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 36156941 - 36156862
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||| | |||| ||||||||||||||||||| ||||  |||||||||  ||| |||||||||||| |||||| |||||    
T  36156941 cagctcaagttcgactcgtttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaagcacat 36156862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 46945281 - 46945215
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac 213  Q
    ||||||| ||| ||| ||||||||||||||||||| ||||| |||||| |||||||| || ||||||    
T  46945281 gtctgagctcgactcaactcgataagaattggttcggctcgaaactcgactcgagtttgaaacaaac 46945215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 11055973 - 11055892
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcg 194  Q
    ||||||| |||||||||||||| ||||| ||  | |||||||||| ||||||||| |||||||||  || ||||| ||||||    
T  11055973 tagggctagaaatgagtcgagtcgagtcgaatccatctgagttcgactcgactcggtaagaattgactcggctcgaaactcg 11055892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 38493737 - 38493652
Alignment:
Q  120 ggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcg 205  Q
    ||||||||||| ||| || || |||||||||||||||| |||||| ||||||||||| | || ||| | ||||||  |||||||||    
T  38493737 ggaaatgagtctagtcgaatcgaactcgtctgagttcgactcgacccgataagaattagatcggcttgaaactcgaatcgagttcg 38493652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 44377650 - 44377695
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||    
T  44377650 gctcgactcgataagaattggttcggctcgaaactcgactcgagtt 44377695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 52812967 - 52813030
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaatt 176  Q
    |||||||  ||||||||||||| ||  | |||  ||||||||||||||||||||||||||||||    
T  52812967 tagggctaaaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaatt 52813030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 54742194 - 54742273
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||||| ||||| |||||||||||||||||| ||||  ||||| |||   || |||||||||||| |||||| |||||    
T  54742194 cagctcgagttcggttcgtttaaagttcacgaacagtttggttcgactcatcaggttcaattcgtttgttcaaagcacat 54742273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 12790286 - 12790212
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcg 187  Q
    |||||||| ||||||||||||| ||  | |||  ||||||| ||||||||| |||||||||||||| || |||||    
T  12790286 tagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctcg 12790212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 45674310 - 45674372
Alignment:
Q  119 tggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttc 181  Q
    |||||||||||||||| ||  | |||  | ||||| |||||||||||||||||||||||||||    
T  45674310 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttc 45674372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 48340268 - 48340198
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||| |||||||||||||||| || ||||  ||||| |||  |||||||||||||||| |||||| |||||    
T  48340268 ttcgactcgtttaaagttcacaaacagtttggttcgactcattagattcaattcgtttgttcaaagcacat 48340198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 50711536 - 50711490
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    |||||||||||||||||||||||| ||||  ||||||| ||||||||    
T  50711536 gctcgactcgataagaattggttcggctcaaaactcggttcgagttc 50711490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 16743214 - 16743169
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||||||||||||||||||| ||||| |||||| ||| ||||    
T  16743214 gctcgactcgataagaattggttcggctcgaaactcgactcaagtt 16743169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 36538077 - 36538249
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||    |||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||    
T  36538077 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36538176  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| || ||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  36538177 ctattttttcagctcgagtttggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 36538249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 20986064 - 20986222
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||| ||||||||||||||||| ||  | |||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||    
T  20986064 taggactggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcgacacgaa 20986163  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |        |||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  20986164 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttctgttcggctcg 20986222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 27633142 - 27633309
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  | ||||| ||||||||||| ||||||||||||||| ||||| |||||||||| ||||| |||||||    
T  27633142 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataagaattggttcggctcgaaactcggctcaagttcaacacaaa 27633241  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| ||||    
T  27633242 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttca 27633309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 41958589 - 41958719
Alignment:
Q  155 tcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    |||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||        |||||||| ||||||||||||||||||||||||    
T  41958589 tcggttcgactcgataaaaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaa 41958688  T
Q  255 tagttcagttcggctcgatagattcaattcg 285  Q
     ||||| |||||||||| ||| |||| ||||    
T  41958689 cagttcggttcggctcgttaggttcagttcg 41958719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 271
Target Start/End: Original strand, 12139400 - 12139524
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaag 246  Q
    ||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||        |||||||| ||||||||||||||||    
T  12139400 gtctgagctcggttcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaag 12139499  T
Q  247 ttcacgaatagttcagttcggctcg 271  Q
    ||||||||  |||| |||| |||||    
T  12139500 ttcacgaactgttcggttcagctcg 12139524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 2647740 - 2647600
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||||| || | ||||||  ||||||||||||||||||||||||||| ||||| |||||| ||||||||| | || ||    
T  2647740 tagggctggaaatgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaaccaa 2647641  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |          |||||| |||||||||||||||||||||||    
T  2647640 cctttttttgggctcgagttcggctcgtttaaagttcacga 2647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 287
Target Start/End: Complemental strand, 44741436 - 44741262
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| ||||||||||| |||| ||  | |||  ||||||| ||||||||||| |||||||||| | || ||||| |||||| |||||||||||||| ||    
T  44741436 tagggttggaaatgagttgagttgaaccgaacctgtctgagctcggctcgacttgataagaatttgctcggctcgaaactcgactcgagttcgacacgaa 44741337  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
    |        |||||| |||||| ||||||||||||||||||| ||||| ||| | |||| ||| |||||||||||    
T  44741336 ctcttttttcagctcaaattcgactcgtttaaagttcacgaacagttcggtttgactcgttaggttcaattcgtt 44741262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 18667120 - 18667224
Alignment:
Q  108 gcaaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgac 207  Q
    |||| ||||| ||||||||| |||||| || || |||||||||||| | ||||||||||||||||||| | ||| ||||| |||| | |||||||||||     
T  18667120 gcaattagggttggaaatgaatcgagtcgaatcgaactcgtctgagcttggctcgactcgataagaatagcttcggctcgaaacttgactcgagttcgaa 18667219  T
Q  208 acaaa 212  Q
    |||||    
T  18667220 acaaa 18667224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 39801150 - 39801217
Alignment:
Q  142 aactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    ||||| |||||| |||||||||||||| ||||||| |||||||||| || ||||||||||||||||||    
T  39801150 aactcatctgagctcggctcgactcgagaagaattagttcagctcgaaattcggctcgagttcgacac 39801217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 11027287 - 11027433
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||| ||||||||||| ||| ||||  |||||||| |||| | ||| | ||||| ||||||| ||||| ||    
T  11027287 tagggctggaaatgagtcgagtcgaatcgaacttgtctgagttcgactcaactcattaagaatttgttcggttcgaacctcggatcgagtttgacacgaa 11027386  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagtt 259  Q
    |        || ||| | |||||||||||||||||||||||| ||||    
T  11027387 ctttttttccaactcaagttcggctcgtttaaagttcacgaacagtt 11027433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 26435801 - 26435939
Alignment:
Q  147 gtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaag 246  Q
    ||||||| ||||||||| ||||||||||||||||| | ||| ||||||| ||||||||||||| ||         || ||||| |||| || ||||||||    
T  26435801 gtctgagctcggctcgattcgataagaattggttcggttcgaaactcggttcgagttcgacacgaaatattttttcaactcgagttcgacttgtttaaag 26435900  T
Q  247 ttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||| | ||| |||||||||| ||| |||| ||||    
T  26435901 ttcacgaacaattcggttcggctcgttaggttcagttcg 26435939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 33830890 - 33831045
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||  | |||  ||||||| |||||||||||||||||||||||||            |||||||||||||||||| ||    
T  33830890 tagggttggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggt------------tcggctcgagttcgacacgaa 33830977  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
    |        |||||||| |||||||||||||||||||||||| | ||| |||||||||| ||| ||||    
T  33830978 ctattttttcagctcgagttcggctcgtttaaagttcacgaacaattcggttcggctcgttaggttca 33831045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 288
Target Start/End: Complemental strand, 38410333 - 38410203
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||||||| |||||||||| ||||  || | ||||| ||||| | |||||||||        |||||||| || ||||||||||||||||||||| ||    
T  38410333 gctcgactcgttaagaattggctcagtccgaacctcggttcgagcttgacacaaacttttttttcagctcgagttaggctcgtttaaagttcacgaacag 38410234  T
Q  258 ttcagttcggctcgatagattcaattcgttt 288  Q
    ||  |||||||||  ||| ||||||||||||    
T  38410233 tttggttcggctcattaggttcaattcgttt 38410203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 33164625 - 33164532
Alignment:
Q  192 tcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||||||||||||||||| |||        |||||| | |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  33164625 tcggctcgagttcgacacgaactattttttcagctccagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 33164532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 1093914 - 1093969
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcga 168  Q
    |||||||||||||||||||||| ||||| |||  ||||||||||| ||||||||||    
T  1093914 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagttcgactcgactcga 1093969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 30711560 - 30711639
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||| | |||||||||||||||||||||||| ||||  |||||||||  ||| || ||||||||| |||||| |||||    
T  30711560 cagctcaagttcggctcgtttaaagttcacgaacagtttggttcggctcattaggtttaattcgtttgttcaaaacacat 30711639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 20204415 - 20204353
Alignment:
Q  226 tcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
    |||| |||||||||||||||||||||||| ||||  ||||| |||  ||||||||||||||||    
T  20204415 tcgagttcggctcgtttaaagttcacgaacagtttggttcgactcattagattcaattcgttt 20204353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 18053394 - 18053459
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattgg 178  Q
    |||||||||||||||||||||| || || |||| ||||||  ||| ||||||||| ||||||||||    
T  18053394 tagggctggaaatgagtcgagtcgaatcgaacttgtctgatctcgactcgactcgttaagaattgg 18053459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 34116772 - 34116711
Alignment:
Q  234 ggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    ||||||||||||||||||||| ||||  |||||||||  ||| |||||||||||| ||||||    
T  34116772 ggctcgtttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaa 34116711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 40675210 - 40675327
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||| ||||||||||||||||| ||||| |||||| ||||||||||| || |||         | ||| |||| |||||||||||||||||| || |     
T  40675210 gctcgattcgataagaattggttcggctcgaaactcgactcgagttcgatacgaaccatttttttaactcaaatttggctcgtttaaagttcacaaacaa 40675309  T
Q  258 ttcagttcggctcgatag 275  Q
     || ||||||||||||||    
T  40675310 ctcggttcggctcgatag 40675327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 34064242 - 34064301
Alignment:
Q  226 tcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |||| |||||||||||||||||||||||| ||||| |||||| ||| ||| |||| ||||    
T  34064242 tcgagttcggctcgtttaaagttcacgaacagttcggttcggttcgttaggttcagttcg 34064301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 35380360 - 35380438
Alignment:
Q  119 tggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggct 197  Q
    ||||||||||| |||| ||||| || | | || || |||||||||||||||||||||| | || ||||| |||||||||    
T  35380360 tggaaatgagtggagttgagtcgaagttgacttagctcggctcgactcgataagaattagatcggctcgaaactcggct 35380438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 41648743 - 41648833
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||| ||||||||||||| ||||| ||   ||||||||| | ||  ||||||||| ||||||||||||||  || ||| ||||||||    
T  41648743 tagggctgaaaatgagtcgagtcgagtcgaaactgtctgagtttgacttaactcgataaaaattggttcagctcaaaattcgactcgagtt 41648833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 29478043 - 29478116
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctc 186  Q
    |||||||||||||||| |||||  || | |||||||||||| || | ||||||| |||||| ||||||| ||||    
T  29478043 tagggctggaaatgagacgagtcaagccgaactcgtctgagctcagttcgactcaataagatttggttcggctc 29478116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 113 - 288
Target Start/End: Original strand, 7957054 - 7957229
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||    
T  7957054 tagggctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcaacacgaa 7957153  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgttt 288  Q
    |        |||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||| || | |||||||    
T  7957154 ctattttttcagctcgagttcagctcgtttaaagttcacgaacagttcggttcggctcgttaggtttagttcgttt 7957229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 280
Target Start/End: Original strand, 18961840 - 18962012
Alignment:
Q  108 gcaaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgac 207  Q
    |||| ||| ||||||||||||||||||  | || |||  | ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  18961840 gcaagtagtgctggaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgac 18961939  T
Q  208 acaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
    ||||||        |||| ||| |||| ||||||||||||||||||| ||||| |||||||||| ||| ||||    
T  18961940 acaaactattttttcagcccgagttcgactcgtttaaagttcacgaacagttcggttcggctcgctaggttca 18962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 10346212 - 10346384
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||||| |||||||||| ||| ||  | |||  || |||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||    
T  10346212 tagggctagaaatgagtcaagtcgaaccgaacctgtttgagctcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 10346311  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  10346312 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 10346384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 33109845 - 33109923
Alignment:
Q  126 gagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    ||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttc 33109923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 13311359 - 13311489
Alignment:
Q  119 tggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnn 218  Q
    |||||||||||||||| ||||||     ||||||| ||| |||||||||||||||||||||||  |||  ||||||| |||||||||| || |||         
T  13311359 tggaaatgagtcgagtcgagtct-----gtctgagctcgactcgactcgataagaattggttcgactcaaaactcggttcgagttcgaaacgaacctttt 13311453  T
Q  219 nnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
        ||||||| ||||||||||||||||||||||||    
T  13311454 ttctagctcgagttcggctcgtttaaagttcacgaa 13311489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 6998576 - 6998670
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgac 207  Q
    |||| ||||||||||||||||| ||  | |||  ||||||| |||||||||||||||||||||| | || ||||| |||||| ||||||||||||    
T  6998576 taggactggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttcgac 6998670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 306
Target Start/End: Complemental strand, 25181260 - 25181112
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||||||| |||||||| | |||||||| ||||| ||| ||||||||||| |||         ||||||| |||| |||||||||| ||||| || ||    
T  25181260 gctcgactcgttaagaatttgctcagctcgaaactcagcttgagttcgacacgaactcttttttaagctcgagttcgactcgtttaaaattcacaaacag 25181161  T
Q  258 ttcagttcggctcgatagattcaattcgtttattcaaatcacattactc 306  Q
    |||  ||||||||| ||| |||||||| |||  ||||||||||| ||||    
T  25181160 ttcgattcggctcgttagtttcaattcattttctcaaatcacataactc 25181112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 6998659 - 6998721
Alignment:
Q  225 ctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtt 287  Q
    ||||| |||| ||||||||||||||||||| ||||| |||||||||| ||| |||||||||||    
T  6998659 ctcgagttcgactcgtttaaagttcacgaacagttcggttcggctcgttaggttcaattcgtt 6998721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 10962444 - 10962374
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||||||||||||||||||||||| ||||  |||||||||  ||| |||||||||||| |||||| |||||    
T  10962444 ttcggctcgtttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaagcacat 10962374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 7436700 - 7436839
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||| |||| |||||||| || || |||  ||||||| ||| |||||||||||||||| |||||| ||||| |||||  |||||||| || || ||    
T  7436700 tagggctgaaaataagtcgagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactccactcgagtttgaaacgaa 7436799  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |        || ||||| |||||||||||||||||||||||    
T  7436800 c-cttttttcaactcgagttcggctcgtttaaagttcacga 7436839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 22295385 - 22295456
Alignment:
Q  142 aactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac 213  Q
    |||| |||| || ||||||| ||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||    
T  22295385 aacttgtcttagctcggctcaactcgattagaattggttcggctcgaaactcgactcgagttcgaaacaaac 22295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 12428088 - 12428190
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||||||||||||||||| ||| ||||| |||||| ||||||||||| || |||         ||||||| |||| ||||||||||||| ||||| ||    
T  12428088 gctcgactcgataagaattgattcggctcgaaactcgactcgagttcgatacgaactttttgttaagctcgagttcgactcgtttaaagtttacgaacag 12428187  T
Q  258 ttc 260  Q
    |||    
T  12428188 ttc 12428190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 17439537 - 17439625
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgag 201  Q
    |||||||| ||||||||||||| ||||| ||||   || || ||||||||||||||||| ||||   || ||||| |||||||||||||    
T  17439537 tagggctgaaaatgagtcgagttgagtcgaacttagctaagctcggctcgactcgataaaaattaactcggctcgaaactcggctcgag 17439625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 26644007 - 26644079
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacatta 303  Q
    |||||||||||||||||| ||||| || |  |||||||||  ||| |||| ||||||| |||||| |||||||    
T  26644007 ttcggctcgtttaaagttgacgaacaggttggttcggctcattaggttcatttcgtttgttcaaagcacatta 26644079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 26749973 - 26750045
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacatta 303  Q
    |||||||||||||||||| ||||| || |  |||||||||  ||| |||| ||||||| |||||| |||||||    
T  26749973 ttcggctcgtttaaagttgacgaacaggttggttcggctcattaggttcatttcgtttgttcaaagcacatta 26750045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 285
Target Start/End: Original strand, 36418523 - 36418692
Alignment:
Q  116 ggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnn 215  Q
    ||||||||||||||||||| || || ||   | ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||       
T  36418523 ggctggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaatta 36418622  T
Q  216 nnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
          |||||||| ||||| |||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  36418623 ttttttcagctcgagttcggttcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 36418692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 37441911 - 37441795
Alignment:
Q  155 tcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||        |||||||| ||||||||||||||||||||||||    
T  37441911 tcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaa 37441812  T
Q  255 tagttcagttcggctcg 271  Q
     ||||| ||||||||||    
T  37441811 cagttcggttcggctcg 37441795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 32179333 - 32179491
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||| | ||||| ||||||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||| ||    
T  32179333 tagggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcgaaactcggcttgagtttgacacgaa 32179432  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |        |||||||| ||||||||||||||| |||||||| ||||| ||||||||||    
T  32179433 ctattttttcagctcgagttcggctcgtttaaaattcacgaacagttcggttcggctcg 32179491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 112 - 302
Target Start/End: Complemental strand, 45582240 - 45582050
Alignment:
Q  112 atagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaa 211  Q
    ||||||||||||||||||||||| ||||| ||   || |||| ||| |||||||||||||| ||| |||||||||| ||||||| | |||||||||||      
T  45582240 atagggctggaaatgagtcgagtcgagtcgaatctgtatgagctcgactcgactcgataaggattagttcagctcgaaactcggtttgagttcgacacgg 45582141  T
Q  212 acnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacatt 302  Q
    ||        |||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| ||  |||| ||| ||| |||||||||||||    
T  45582140 acttttttttcagctcgagttcggttcgtttaaagttcgcgaatagttcaattcagctcgttaagttcagttcatttgttcaaatcacatt 45582050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 45654507 - 45654340
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||||| |||  | ||||| ||| ||||||||||||||||||||||||||| | || |||||||||||||||||| ||    
T  45654507 tagggttggaaatgagtcgagtcgagtcgaacctgcctgagctcgactcgactcgataagaattggttcagcttgaaattcggctcgagttcgacacgaa 45654408  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
             |||||||  |||| ||||||||||||| | ||||||||| |||||||||| ||| ||||    
T  45654407 ttattttttcagctcgggttcgactcgtttaaagtttatgaatagttcggttcggctcgttaggttca 45654340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 21681762 - 21681595
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||| ||||| ||||| |||  | ||||| ||  |||||||||||||||||||||||||||   ||||||||||||||||||||| ||    
T  21681762 tagggttggaaatgagccgagtcgagtcgaacctgcctgagctcaactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacgaa 21681663  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattca 280  Q
    |        |||||||  |||  |||||||||| |||| ||||||||| |||||||||| ||| ||||    
T  21681662 ctattttttcagctcgggttcaactcgtttaaaattcatgaatagttcggttcggctcgttaggttca 21681595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 7955644 - 7955790
Alignment:
Q  108 gcaaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgac 207  Q
    |||| ||||| |||||||||||||||| ||||| ||   ||||||| ||| |||||||| |||||||||||||| ||||| ||||||| ||||||||||     
T  7955644 gcaactagggttggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactcggttcgagttcgaa 7955743  T
Q  208 acaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    || ||          ||||||| ||||||||||||||||||||||||    
T  7955744 acgaatcttttttctagctcgagttcggctcgtttaaagttcacgaa 7955790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 28005733 - 28005827
Alignment:
Q  111 aatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcg 205  Q
    |||||||||||||||||||||||| ||||| |||   |||||| ||| ||||||||||||||||||||||| ||||| |||||| ||| ||||||    
T  28005733 aatagggctggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcaagttcg 28005827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 15257984 - 15257845
Alignment:
Q  110 aaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    ||||||||||| ||||||||||||| || |||     ||||||| ||  ||||||||||||||||||||||| ||||| ||||||| |||||||||| ||    
T  15257984 aaatagggctgaaaatgagtcgagtcgaatct-----gtctgagctcaactcgactcgataagaattggttcggctcgaaactcggttcgagttcgaaac 15257890  T
Q  210 aaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
     |||         ||||||| ||||||||||||||||||||||||    
T  15257889 gaaccatttttctagctcgagttcggctcgtttaaagttcacgaa 15257845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 29678244 - 29678104
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||  ||||||| | | |||||||||||||||| |||||| ||||| |||||| ||| ||||||| || ||    
T  29678244 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcgaaactcgactcaagttcgaaacgaa 29678145  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |        || ||||| |||||||||||||||||||||||    
T  29678144 cctttttttcatctcgagttcggctcgtttaaagttcacga 29678104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 5205250 - 5205160
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||||||||||||||||| ||||| |||  ||||||| |||  ||||||| |||||||||||||| ||||| |||||| ||||||||    
T  5205250 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactcgactcgagtt 5205160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 24575300 - 24575473
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    ||||| |||||||||||||||| ||||| |||  ||||||| |||  | || ||||||||||||||||| ||||| |||||| |||||||| || || ||    
T  24575300 tagggttggaaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaa 24575399  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgt 286  Q
    |         | ||||| |||||||||||||||||||||||| |  || |||||||||| ||| ||||| ||||    
T  24575400 ctttttttttaactcgagttcggctcgtttaaagttcacgaacaactcggttcggctcgttaggttcaactcgt 24575473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 38061759 - 38061666
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||||||||||||||||||||| ||||| |||  ||||||| |||  |||||||||||||||||||||| ||||  || ||| |||||||||||    
T  38061759 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggttcggctcaaaattcgactcgagttcga 38061666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 31868907 - 31869047
Alignment:
Q  131 gagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaa 230  Q
    |||| ||||| |||||||||||| |||||||||||| ||||||||||  || ||||| |||||| ||||||||||| ||||||         | ||||      
T  31868907 gagtcgagtcaaactcgtctgagctcggctcgactcaataagaattgactcggctcgaaactcgactcgagttcgatacaaaccattttttaaactcggg 31869006  T
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    |||||||||||||||||||||||| |  || ||||||||||    
T  31869007 ttcggctcgtttaaagttcacgaacatctcggttcggctcg 31869047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 43090167 - 43090032
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||||| |||| ||||||| ||||||||||     |||||||||||| ||||| |||||| ||||||||| | || ||    
T  43090167 tagggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgac-----aagaattggttcggctcgaaactcgactcgagttcaaaacgaa 43090073  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacga 253  Q
    |          |||||| |||||||||||||||||||||||    
T  43090072 catttttttgggctcgagttcggctcgtttaaagttcacga 43090032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 47603549 - 47603463
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcg 199  Q
    |||||||||||||||||||||| ||  | |||  | ||||||||||||| ||||||||||||||||||| ||||| |||||| ||||    
T  47603549 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcgactcg 47603463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 35309044 - 35309176
Alignment:
Q  149 ctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagtt 248  Q
    ||||| |||| |||||||||||||||||||||| ||||| ||||||| |||||||| |||| |          |||||||| |||||||| |||||||||    
T  35309044 ctgagctcggttcgactcgataagaattggttcggctcgaaactcggttcgagttccacacga----ttttttcagctcgagttcggctcatttaaagtt 35309139  T
Q  249 cacgaatagttcagttcggctcgatagattcaattcg 285  Q
     ||||| ||||| |||||||||| ||| |||| ||||    
T  35309140 tacgaacagttccgttcggctcgttaggttcagttcg 35309176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 24470654 - 24470494
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | |||  | ||||| ||||||| |||||||||||||||||            ||||||||||||||| || ||    
T  24470654 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcaactcgataagaattggt------------tcggctcgagttcgatacgaa 24470567  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcg 285  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  24470566 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttaggttcagttcg 24470494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 301
Target Start/End: Original strand, 42936495 - 42936685
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||| ||||||||||  ||||||||| |||||||||| ||   ||| | ||| | ||||||| | ||||||    
T  42936495 tagggctggaaatgagtcgagtcgaatcgaacttgtctgagttcaactcgactcgttaagaattggctcgattcgaacctcagttcgagtttgtcacaaa 42936594  T
Q  213 c--nnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |           || |||| |||||||||||||||||||||||| ||||  |||| | || |||| |||||||||||| |||||| |||||    
T  42936595 cttttttttttaagttcgagttcggctcgtttaaagttcacgaacagtttggttcagttcaataggttcaattcgtttgttcaaagcacat 42936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 295
Target Start/End: Original strand, 40002320 - 40002502
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || ||| ||||| | |||| ||||||||| |||||||||| || | ||| | ||||| || |||| ||||| ||    
T  40002320 tagggctggaaatgagtcgagtcgaatcgaacccgtctaaattcgactcgactcgttaagaattggctcggttcgaacctcggttcaagtttgacacgaa 40002419  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |        |||||| | |||| ||||||||||||||| ||| | || ||| | ||||  ||| |||||||||||| ||||||    
T  40002420 ctttttttccagctcaagttcgactcgtttaaagttcatgaacaatttagtgcagctcattaggttcaattcgtttgttcaaa 40002502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 7994783 - 7994927
Alignment:
Q  150 tgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttc 249  Q
    |||||||| ||| ||||||||||||||| ||||||||| |||||| ||||||||||| || |||         ||| ||| ||| |||||| |||||||     
T  7994783 tgagttcgactcaactcgataagaattgattcagctcgaaactcgactcgagttcgaaacgaaccttttttt-agcacgagttcagctcgtataaagttt 7994881  T
Q  250 acgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||||||||  |||| |||| ||| ||||| ||||||| |||||    
T  7994882 acgaatagttcgattcgactcgttaggttcaactcgtttactcaaa 7994927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 15014116 - 15014192
Alignment:
Q  225 ctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    ||||| |||||||||||||||||||||||| | ||  |||||||||  || ||||||||||||| |||||| |||||    
T  15014116 ctcgagttcggctcgtttaaagttcacgaacaatttggttcggctcattatattcaattcgtttgttcaaagcacat 15014192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 46265630 - 46265566
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||||||||||||||||||||| ||||  |||||||||  ||| |||||||||||| ||||||    
T  46265630 ttcggctcgtttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaa 46265566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 3576984 - 3577079
Alignment:
Q  159 ctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    ||||||| ||||||||||||||||||||| ||||||  | |||||||| ||||||         | ||||| ||||||||||||||||||||||||    
T  3576984 ctcgacttgataagaattggttcagctcgaaactcgatttgagttcgatacaaacattttatttaactcgagttcggctcgtttaaagttcacgaa 3577079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 19507938 - 19507993
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcga 168  Q
    |||||||||||||||||||||| ||||| ||||  |||||| ||||||||||||||    
T  19507938 tagggctggaaatgagtcgagtcgagtcgaacttatctgagctcggctcgactcga 19507993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 13645814 - 13645756
Alignment:
Q  155 tcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac 213  Q
    ||||||||||||||| ||||||||||| ||||| |||||| |||||||| || ||||||    
T  13645814 tcggctcgactcgattagaattggttcggctcgaaactcgactcgagtttgaaacaaac 13645756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 7840740 - 7840832
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    ||||| |||||||||||||||| || || || ||||||||  | | ||||||||| ||||||||||||| ||||| || ||| |||||||||||    
T  7840740 tagggttggaaatgagtcgagttgaatcgaattcgtctgaacttgactcgactcgttaagaattggttcggctcg-aaatcgactcgagttcga 7840832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 23916239 - 23916312
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||| | ||||||||||||||||| |||||| ||||  |||||| ||  |||||||||||||||| ||||||    
T  23916239 cagctcaagttcggctcgtttaaagtccacgaacagtttggttcggttcattagattcaattcgtttgttcaaa 23916312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 14579171 - 14578983
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||  || |||| ||| ||||||||| |||||||||| |  | ||  | ||||| ||||||| ||||| ||    
T  14579171 tagggctggaaatgagtcgagtcgaatcgaacctgtatgagctcgactcgactcgttaagaattggctttgttcaaacctcggttcgagtttgacacgaa 14579072  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |         || || | ||||||||||||||| |||||||| ||||  ||||| |||  ||| |||||||||||| |||||| |||||    
T  14579071 cttttttttgagttcaagttcggctcgtttaaaattcacgaacagtttggttcgactcattaggttcaattcgtttgttcaaagcacat 14578983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 14771003 - 14770815
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||| ||||| || || |||  || |||  ||| ||||||||| |||||||||| || |  || | ||||| ||||| | ||||| ||    
T  14771003 tagggctggaaatgagccgagtcgaatcgaacatgtttgaactcgactcgactcgttaagaattggctcggtccgaacctcggttcgagcttgacacgaa 14770904  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |        |||| ||| ||||||||||||||||||||  || ||||  |||||||||| ||| |||| ||||||| |||||| |||||    
T  14770903 cttttttttcagcccgagttcggctcgtttaaagttcagaaacagtttggttcggctcgttaggttcatttcgtttgttcaaagcacat 14770815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 15662408 - 15662472
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |||||||||||||||||||||||| ||||  ||||| |||  ||| |||||||||||| ||||||    
T  15662408 ttcggctcgtttaaagttcacgaacagtttggttcgactcattaggttcaattcgtttgttcaaa 15662472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 42916788 - 42916724
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    ||||||||| |||||||||||||| ||||  |||||||||  ||| |||||||||||| ||||||    
T  42916788 ttcggctcgcttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaa 42916724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 48152634 - 48152690
Alignment:
Q  125 tgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttc 181  Q
    |||||||| | || || |||| |||||||||||| ||||||||||||||||||||||    
T  48152634 tgagtcgaattgaatcgaacttgtctgagttcggttcgactcgataagaattggttc 48152690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 50445511 - 50445575
Alignment:
Q  142 aactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||||||||||| |||  |||||||| ||||||||| ||||||||| |||||| ||| |||||||    
T  50445511 aactcgtctgagctcgattcgactcgttaagaattgattcagctcgaaactcgactctagttcga 50445575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 573362 - 573323
Alignment:
Q  118 ctggaaatgagtcgagtagagtctaactcgtctgagttcg 157  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  573362 ctggaaatgagtcgagtcgagtcaaactcgtctgagttcg 573323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 23915929 - 23915874
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcga 168  Q
    ||||||||||||||||||||||||| || |||| ||||||| ||| ||||| ||||    
T  23915929 tagggctggaaatgagtcgagtagaatcgaacttgtctgagctcgactcgattcga 23915874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 25125444 - 25125365
Alignment:
Q  222 cagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |||| ||| ||||||||||||||||||||| || ||||  |||||||||  ||| |||| ||||||| |||||| |||||    
T  25125444 cagcacgagttcggctcgtttaaagttcacaaacagtttggttcggctcattaggttcatttcgtttgttcaaagcacat 25125365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 28005824 - 28005879
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgt 286  Q
    ||||||||||||||||||| |||| | |||||||||||||| ||| ||||| ||||    
T  28005824 ttcggctcgtttaaagttcgcgaacaattcagttcggctcgttaggttcaactcgt 28005879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 295
Target Start/End: Original strand, 35810110 - 35810291
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||   |||||| ||  ||||||||| |||||||||  || | ||| | ||||| | |||||  |||| ||    
T  35810110 tagggctggaaatgagtcgagtcgaatcgaacctatctgagctcaactcgactcgttaagaattgactcggttcgaacctcggtttgagttgaacacgaa 35810209  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    |        |||||| | |||||||||||||| ||||||||| ||||  |||||||||  ||| |||||||||||| ||||||    
T  35810210 ctttttttccagctcaagttcggctcgtttaa-gttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaa 35810291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 38061620 - 38061572
Alignment:
Q  223 agctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcg 271  Q
    ||||||| ||||||||||||||| |||||||| ||||| |||| |||||    
T  38061620 agctcgagttcggctcgtttaaaattcacgaacagttcggttcagctcg 38061572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 44595869 - 44595917
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    |||||||||||||||||||||||| | ||| |||||| || ||||||||    
T  44595869 gctcgactcgataagaattggttcggttcgaaactcgacttgagttcga 44595917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 18710 - 18867
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||  | ||   || |||| ||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||| ||    
T  18710 tagggctggaaatgagtcgagtcgaaccgaatctgtttgagctcggctcgactcgataagaattggttcggctcaaaactcggttcgagttcgacacgaa 18809  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctc 270  Q
    |        |||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  18810 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctc 18867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 17865806 - 17865720
Alignment:
Q  121 gaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgac 207  Q
    |||| ||||||||| ||||  ||||||| ||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||||    
T  17865806 gaaaagagtcgagtcgagttgaactcgtttgagtccggctcaactcgataagaattggttcagctcgaaactcgactcgagttcgac 17865720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 11161114 - 11161230
Alignment:
Q  149 ctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagtt 248  Q
    ||||| ||||||| ||||||||||||||||||| ||||| | ||||||||||||||| ||| |||        |||||||| ||| ||||||||||||||    
T  11161114 ctgagctcggctccactcgataagaattggttcggctcgaacctcggctcgagttcgccacgaactattttttcagctcgagttcagctcgtttaaagtt 11161213  T
Q  249 cacgaatagttcagttc 265  Q
    |||||| ||||| ||||    
T  11161214 cacgaacagttcggttc 11161230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 301
Target Start/End: Original strand, 22563263 - 22563446
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||| | || |||     ||||||| ||||||| ||||||||||| || | || ||||| |||||| ||||||||| |||| ||    
T  22563263 tagggctggaaatgagtcgaatcgaatct-----gtctgagctcggctcaactcgataagattttgctcggctcgaaactcgactcgagttcaacacgaa 22563357  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaatcacat 301  Q
    |        |||||||| |||| ||||||||| ||||||||| ||||| |||||| ||| ||| ||||||| ||||  |||||||||||    
T  22563358 ctcttttttcagctcgagttcgactcgtttaaggttcacgaacagttcggttcggttcgttaggttcaatttgtttgctcaaatcacat 22563446  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 22930943 - 22930889
Alignment:
Q  159 ctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaac 213  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  22930943 ctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaac 22930889  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 254
Target Start/End: Complemental strand, 9413404 - 9413263
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| ||    |||| ||||||| ||| |||||||||||||||| |||||| ||||| |||||| || ||||||||||| ||    
T  9413404 tagggctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttcgacacgaa 9413305  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaa 254  Q
    |         ||||| | |||||||| |||||||||||||||    
T  9413304 ccttttttttagctcaagttcggctcatttaaagttcacgaa 9413263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 43966887 - 43966973
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttc 204  Q
    |||||||||||||||||||||| ||     ||| ||||||  ||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  43966887 tagggctggaaatgagtcgagtcga-----acttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttc 43966973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 27189693 - 27189629
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattg 177  Q
    |||||||||||||||||||||| || || |||| ||||||| ||| ||||||||| |||||||||    
T  27189693 tagggctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcgttaagaattg 27189629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 1091197 - 1091241
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatag 275  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||    
T  1091197 ttcgactcgtttaaagttcacgaacagttcagttcggctcaatag 1091241  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 13784205 - 13784295
Alignment:
Q  108 gcaaatagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||||||||||||||| |||||| ||||| |||  ||||||     |||||||||||||| ||||||||| ||||  |||| | ||||||||    
T  13784205 gcaaatagggctggaaatgattcgagtcgagtcgaacctgtctga-----gctcgactcgataaaaattggttcggctcaaaacttgactcgagtt 13784295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 15212000 - 15211953
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcg 205  Q
    ||||||||| |||||| |||||| |||||| |||||||||||||||||    
T  15212000 gctcgactccataagatttggtttagctcgaaactcggctcgagttcg 15211953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 281
Target Start/End: Complemental strand, 25731949 - 25731826
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaacnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatag 257  Q
    |||||||||||||||||||||||| ||||| || ||| ||| |||||||  |||||         | || || |||||||| ||||||||||||||| |     
T  25731949 gctcgactcgataagaattggttcggctcgaaagtcgactcaagttcgatgcaaaccctttttttaacttgagttcggctcatttaaagttcacgaaaaa 25731850  T
Q  258 ttcagttcggctcgatagattcaa 281  Q
     ||||||||||||| ||| |||||    
T  25731849 ctcagttcggctcggtaggttcaa 25731826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 32740279 - 32740353
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcg 187  Q
    |||||||| ||||||||||| | ||||| || |  ||||||||||  ||||||| ||||||||| ||||||||||    
T  32740279 tagggctgaaaatgagtcgaatcgagtcgaatttatctgagttcgattcgactcaataagaattagttcagctcg 32740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 33280772 - 33280708
Alignment:
Q  119 tggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcag 183  Q
    |||||||||||||||| || || |||  ||||||||||| ||||||||| | |||||||| ||||    
T  33280772 tggaaatgagtcgagtcgaatcgaacctgtctgagttcgactcgactcgtttagaattggatcag 33280708  T

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Target: scaffold0106 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 26495 - 26586
Alignment:
Q  115 gggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcga 206  Q
    ||||||||||| |||||||| || || |||  || |||| ||| ||||||||||||||||||||||||||||| || ||| |||||||||||    
T  26495 gggctggaaatcagtcgagttgaatcgaacctgtttgagctcgactcgactcgataagaattggttcagctcgaaattcgactcgagttcga 26586  T

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Target: scaffold0658 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 6533 - 6437
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacac 209  Q
    |||||||| ||||||||||||| || |  |||  | ||||| ||| ||||||||||||||||||||||| | | | |||||||||||||||||||||    
T  6533 tagggctgaaaatgagtcgagtcgaattgaacctgcctgagctcgactcgactcgataagaattggttcgggttgaaactcggctcgagttcgacac 6437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 1508 - 1463
Alignment:
Q  158 gctcgactcgataagaattggttcagctcgtaactcggctcgagtt 203  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||    
T  1508 gctcgactcgataagaattggttcggctcgaaactcgactcgagtt 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 7982 - 7918
Alignment:
Q  231 ttcggctcgtttaaagttcacgaatagttcagttcggctcgatagattcaattcgtttattcaaa 295  Q
    ||||||||| |||||||||||||| ||||  |||||||||  ||| |||||||||||| ||||||    
T  7982 ttcggctcgcttaaagttcacgaacagtttggttcggctcattaggttcaattcgtttgttcaaa 7918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 16492 - 16647
Alignment:
Q  113 tagggctggaaatgagtcgagtagagtctaactcgtctgagttcggctcgactcgataagaattggttcagctcgtaactcggctcgagttcgacacaaa 212  Q
    |||||||||||||||||||||| || || |||  ||||||| ||| ||| |||| | || |||  |||| ||||| |||||| |||||||| || |||||    
T  16492 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcgactcaactcaacaaaaatatgttcggctcgaaactcgactcgagtttgaaacaaa 16591  T
Q  213 cnnnnnnnncagctcgaattcggctcgtttaaagttcacgaatagttcagttcggct 269  Q
    |          |||| | || |||||||||||| |||||||||||||||||||||||    
T  16592 ccttttttag-gctcaagtttggctcgtttaaaattcacgaatagttcagttcggct 16647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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