View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7147_low_7 (Length: 358)
Name: NF7147_low_7
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 39534247 - 39534580
Alignment:
| Q |
17 |
actaaagacagacagaaagatactagtaaagtgtctcttggcttgaaattataaattgaaatgaagtacaatttgtcatacttcagaaaagcatctgttt |
116 |
Q |
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| T |
39534247 |
actaaagacagacagaaagatactagtaaagtgtctcttggcttgaaattataaattgaaatgaagtacaatttgtcatacttcagaaaagcatctgttt |
39534346 |
T |
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| Q |
117 |
cctgtgatatgatttatgnnnnnnntgaagtaagattagttaagcagacctagaaaaaactaattaaaattaccagcagtgaactatcacagtattcccc |
216 |
Q |
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| T |
39534347 |
cctgtgatatgatttatgaaaaaaatgaagtaagattagttaaacagacctagaaaaaactaattaaaattaccagcagtgaactatcacagtattcccc |
39534446 |
T |
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| Q |
217 |
atcactggtcgttttagtcctatcgtgtctaaacactgtcactgtaatttgttctttattgttggttcgattcaaactatccatagagtaagattagtac |
316 |
Q |
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| T |
39534447 |
atcactggtcgttttagtcctatcatgtctaaacactgtcactgtaatttgttctttattgttggttcgattcaaactatccatagagtaagattagtac |
39534546 |
T |
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| Q |
317 |
cctaagctccgaacatatcctcagcagtattatc |
350 |
Q |
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| T |
39534547 |
cctaagctccgaacatatcctcagcagtattatc |
39534580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 34968073 - 34968167
Alignment:
| Q |
40 |
tagtaaagtgtctcttggcttgaaattataaattgaaatgaagtacaatttgtcatacttcagaaaagca---tctgtttcctgtgatatgattt |
131 |
Q |
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| T |
34968073 |
tagtaaagttccttttggcatgaaattataaattgaaatgaagtacaattggttatacttcagaaaatcattttttttttcctgtgatatgattt |
34968167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 10070099 - 10070136
Alignment:
| Q |
308 |
gattagtaccctaagctccgaacatatcctcagcagta |
345 |
Q |
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| T |
10070099 |
gattagtatcctaagctcagaacatatcctcagcagta |
10070136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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