View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7147_low_8 (Length: 315)
Name: NF7147_low_8
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 8322809 - 8322499
Alignment:
| Q |
1 |
cataaaatttaagcattagatcaaggtatcaagattttgagaaggaacagacagttaagattttaatgattaatgtannnnnnnnnngtttcaacgttaa |
100 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
8322809 |
cataaaatttaagcatacgatcaaagtgtcaagattttgagaaggaacagacagttaagattctagcaattaatgt-ctttttttttgtttcaacgttaa |
8322711 |
T |
|
| Q |
101 |
acaataatttttcttacatattaatgttaattgtttattgtaggccaaaatgtttcactacatgagatttttgtttgcacagttattccatattattaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8322710 |
acaataatttttcttacatattaatgttaattgattattgtaggccaaaatgtttcactacatgagatttttgtttgcacagttattccatattattaat |
8322611 |
T |
|
| Q |
201 |
gcaaacttaatgccacactatacgagattatgcatctaataactctacttaatattgtcttccaattaaaattattatcagcagtgctaagtcccttcca |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8322610 |
gcaaacttaatgccacattatacgagattatgcatc---taactctacttaatattgtcttccaattaaaattattatcagcagtactaagtcccttcca |
8322514 |
T |
|
| Q |
301 |
agagataatactaac |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8322513 |
agagataatactaac |
8322499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University