View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7147_low_9 (Length: 289)
Name: NF7147_low_9
Description: NF7147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7147_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 43917755 - 43917988
Alignment:
| Q |
1 |
cttttggtcttgtgtcatttttatttgcttaatcatttccacttcttttaatctctccttaaattatacgatacataataaacttcatcaaatgtcatgc |
100 |
Q |
| |
|
||||||||||| || | |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43917755 |
cttttggtcttttggcctttttatttgcttaatgatttccacttcttttaatctctccttaaattatacaatacataataaacttcatcaaatgtcatgc |
43917854 |
T |
|
| Q |
101 |
tagttaacctctattactcctctccaaagaaaaaacctctattacttctccctttctagtttttgaccagtctaaacaaaaatgattatgataaattagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43917855 |
tagttaacctctattactcctctccaaagaaaaaacctctattacttctccctttctagtttttgaccagtctaaacaaaaatgattatgataaattagg |
43917954 |
T |
|
| Q |
201 |
attatccattgtccattaacattgataataattc |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
43917955 |
attaaccattgtccattaacattgataataattc |
43917988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University