View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7148_low_1 (Length: 283)
Name: NF7148_low_1
Description: NF7148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7148_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 35936856 - 35936732
Alignment:
| Q |
144 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaaaacagtctccaacactgaacattcaaccccactc |
243 |
Q |
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| T |
35936856 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaacacagtctccaacactgaacattcaaccccactc |
35936757 |
T |
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| Q |
244 |
acaaaaatcaagcattccagaataa |
268 |
Q |
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| T |
35936756 |
acaaaaatcaagcattccagaataa |
35936732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 35936993 - 35936908
Alignment:
| Q |
7 |
acatcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacattcgactccactg |
92 |
Q |
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| T |
35936993 |
acatcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacactcgactccactg |
35936908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 35936872 - 35936833
Alignment:
| Q |
7 |
acatcatcaaaatcaaccacacttcaaattcaaacattta |
46 |
Q |
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| T |
35936872 |
acatcatcaaaatcaaccacacttcgaattcaaacattta |
35936833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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