View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7148_low_2 (Length: 227)

Name: NF7148_low_2
Description: NF7148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7148_low_2
NF7148_low_2
[»] chr8 (10 HSPs)
chr8 (16-209)||(548638-548831)
chr8 (16-209)||(23423773-23423966)
chr8 (16-146)||(894453-894583)
chr8 (16-146)||(906060-906190)
chr8 (17-103)||(1963481-1963567)
chr8 (76-158)||(560402-560484)
chr8 (30-80)||(566327-566377)
chr8 (23-103)||(2014862-2014942)
chr8 (23-103)||(2018245-2018325)
chr8 (23-103)||(2436899-2436979)
[»] chr6 (4 HSPs)
chr6 (26-209)||(8294342-8294525)
chr6 (26-170)||(33257230-33257374)
chr6 (22-103)||(845020-845101)
chr6 (22-103)||(870304-870385)
[»] scaffold0428 (1 HSPs)
scaffold0428 (26-170)||(1348-1492)
[»] scaffold0184 (2 HSPs)
scaffold0184 (55-161)||(11590-11696)
scaffold0184 (26-102)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (26-102)||(57568-57644)
[»] chr7 (2 HSPs)
chr7 (121-158)||(16490982-16491019)
chr7 (63-103)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (23-103)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 548831 - 548638
Alignment:
Q  16 ttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548831 ttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtt 548732  T
Q  116 tagtttatggtgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgccgcagtactcaccgatgttttcaaagtggcagtgag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  548731 tagtttatggtgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgctgcatcactcaccgatgttttcaaagtggcagtgag 548638  T

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Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 23423773 - 23423966
Alignment:
Q  16 ttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423773 ttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtt 23423872  T
Q  116 tagtttatggtgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgccgcagtactcaccgatgttttcaaagtggcagtgag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  23423873 tagtttatggtgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgcagcaacactcaccgatgttttcaaagtggcagtgag 23423966  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 894583 - 894453
Alignment:
Q  16 ttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtt 115  Q
    ||||| |||||||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| ||     
T  894583 ttggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtg 894484  T
Q  116 tagtttatggtgtgcctatgattgcttggcc 146  Q
    | ||| ||||||||||||||||||| |||||    
T  894483 tggttaatggtgtgcctatgattgcatggcc 894453  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 906060 - 906190
Alignment:
Q  16 ttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtt 115  Q
    ||||| |||||||||||||| ||||||||||| |||||| ||||| | |||| |||||| ||||||| ||||||||||||| |||||| ||| |||  |     
T  906060 ttggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttgagtcattgtggttggggttcaactttggagactg 906159  T
Q  116 tagtttatggtgtgcctatgattgcttggcc 146  Q
    | ||| |||| |||||| ||||||| |||||    
T  906160 tggttaatggggtgcctgtgattgcatggcc 906190  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  17 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 560484 - 560402
Alignment:
Q  76 tttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgtttgctga 158  Q
    ||||| |||||||||||||||| ||||| ||| ||| || | ||| ||||||| || ||||| ||||||||||| ||||||||    
T  560484 tttttaactcattgtggttggaattcaattttggagagtattgttcatggtgtcccaatgatagcttggccattatttgctga 560402  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  30 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 80  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  23 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  23 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  23 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 8294525 - 8294342
Alignment:
Q  26 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatgg 125  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||| ||||| | |||||||||||||||||||| ||| ||| || | ||| | ||    
T  8294525 catcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacgg 8294426  T
Q  126 tgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgccgcagtactcaccgatgttttcaaagtggcagtgag 209  Q
     |||||  ||||||| |||||||||||||| ||||| || ||||| ||   | ||||||| |||||  ||||||||||||||||    
T  8294425 cgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactgatgtactcaaagtggcagtgag 8294342  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 33257230 - 33257374
Alignment:
Q  26 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatgg 125  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | |||||||||||||||||||| ||| ||| || | ||| | ||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaactttggagagtgtggttaacgg 33257329  T
Q  126 tgtgcctatgattgcttggccattgtttgctgagcagagaatgaa 170  Q
     || ||  ||||||| |||||||||||||| ||||| ||||||||    
T  33257330 cgttccgttgattgcatggccattgtttgcagagcaaagaatgaa 33257374  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  22 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  22 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

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Target: scaffold0428 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 1348 - 1492
Alignment:
Q  26 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatgg 125  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | |||||||||||||||||||| ||| ||| || | ||| | ||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaactttggagagtgtggttaacgg 1447  T
Q  126 tgtgcctatgattgcttggccattgtttgctgagcagagaatgaa 170  Q
     || ||  ||||||| |||||||||||||| ||||| ||||||||    
T  1448 cgtaccgttgattgcatggccattgtttgcagagcaaagaatgaa 1492  T

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Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 11696 - 11590
Alignment:
Q  55 agtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgtttg 154  Q
    |||||| | |||| |||||  |||||||||||||||||||||| ||||  | | ||| || |||| |  ||||||||||||||||||||||| |||||||    
T  11696 agtcatgggtcaattggtgcatttttgactcattgtggttggaattcagttcttgagagtgtagtgttgggtgtgcctatgattgcttggcctttgtttg 11597  T
Q  155 ctgagca 161  Q
    |||||||    
T  11596 ctgagca 11590  T

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Target: scaffold0184; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  26 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 102  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  26 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 102  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 16490982 - 16491019
Alignment:
Q  121 tatggtgtgcctatgattgcttggccattgtttgctga 158  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  16490982 tatggtgtgcctataattgcatggccattgtttgctga 16491019  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  63 ttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  23 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 103  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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