View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7149_high_1 (Length: 719)
Name: NF7149_high_1
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7149_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 16 - 701
Target Start/End: Original strand, 38567460 - 38568154
Alignment:
| Q |
16 |
atcacattaatcactgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacagccaaagcataacctaggaacataagaaacataa |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567460 |
atcacattaatcaccgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacagccaaagcataacctaggaacataagaaacataa |
38567559 |
T |
|
| Q |
116 |
atgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactgcttgcttttcacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567560 |
atgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactgcttgcttttcacc |
38567659 |
T |
|
| Q |
216 |
agtaaaggaagcaacctgaaaatacacacaacatgaggaaggaaattaggctacatgtttatcatagcactgccacacataagcagcaagaaaataaaaa |
315 |
Q |
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| T |
38567660 |
agtaaaggaagcaacctgaaaatacacacaacacgaggaaggaagttaggctacatgtttatcatagcactgccacacataagcagcaagaaaataaaaa |
38567759 |
T |
|
| Q |
316 |
gcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567760 |
gcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttga |
38567859 |
T |
|
| Q |
416 |
ttttgacccacttttaaacctcaaaattattgttcaacacacttttgcatgaattttacgttcaatttttagccacagtcaatttttgttactgtagaac |
515 |
Q |
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| T |
38567860 |
ttttgacccacttttaaacctcaaatttattgttcaacacacttttgcatgaattttacgttcaacttttagccacagtcaatttttgttactgcagaac |
38567959 |
T |
|
| Q |
516 |
caaactcacactta---------gaagtttgcaaatttacttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagctttt |
606 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38567960 |
caaactcacacttagaagttattgaagtttgcaaatttacttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgcgcagctttt |
38568059 |
T |
|
| Q |
607 |
gcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagtgttgacatcaatac |
701 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568060 |
gcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagtgttgacatcaatac |
38568154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 38526332 - 38526562
Alignment:
| Q |
16 |
atcacattaatcactgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacagccaaagcataacctaggaacataagaaacataa |
115 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| |||| |||||||| |
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| T |
38526332 |
atcacattaatcacggtgccaccattatatcctttttcaatgatcatctttgcaccaaaccatactgccaaagcataaccacagaaaataacaaacataa |
38526431 |
T |
|
| Q |
116 |
atgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactgcttgcttttcacc |
215 |
Q |
| |
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|||||||| ||| |||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||| ||| ||| ||||||||||||||| || |
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| T |
38526432 |
ctgtgcctagtcctgctccagctatagtaccttcaaaaactcctgatttgtaagcatctacaagaaatttgctataactagatactgcttgcttttcccc |
38526531 |
T |
|
| Q |
216 |
agtaaaggaagcaacctgaaaatacacacaa |
246 |
Q |
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| T |
38526532 |
agtaaaggatgcaacctgaaaatatacacaa |
38526562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 547 - 697
Target Start/End: Original strand, 38526859 - 38527009
Alignment:
| Q |
547 |
ttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatga |
646 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38526859 |
ttctaacagcataccgttcttattgagccaatggtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatga |
38526958 |
T |
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| Q |
647 |
ttacagccatggcagcacccgacacaacaagaagtggaagtgttgacatca |
697 |
Q |
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| T |
38526959 |
taacagccatggcagcacctgacacaacaagaaatggaagtgttgacatca |
38527009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 10860016 - 10859936
Alignment:
| Q |
319 |
acatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgtt |
400 |
Q |
| |
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|||||||||||| |||||||| |||| ||||||||||| ||| |||| |||||||||||| ||||| |||||| ||||| |
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| T |
10860016 |
acatgtatgtttggttccacttttggaa-gaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgtt |
10859936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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