View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7149_high_2 (Length: 689)

Name: NF7149_high_2
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7149_high_2
NF7149_high_2
[»] chr1 (22 HSPs)
chr1 (9-521)||(33987699-33988208)
chr1 (372-664)||(14654166-14654458)
chr1 (372-664)||(14663957-14664249)
chr1 (372-662)||(14669536-14669827)
chr1 (376-624)||(14683743-14683992)
chr1 (372-662)||(14706077-14706368)
chr1 (372-591)||(14716280-14716499)
chr1 (372-592)||(14708567-14708787)
chr1 (383-591)||(14652525-14652733)
chr1 (383-591)||(14662316-14662524)
chr1 (373-584)||(14679849-14680060)
chr1 (376-578)||(14681592-14681794)
chr1 (373-578)||(14674471-14674676)
chr1 (376-478)||(14676625-14676727)
chr1 (376-599)||(38175421-38175644)
chr1 (380-484)||(14667117-14667221)
chr1 (374-484)||(28366204-28366315)
chr1 (386-484)||(11872487-11872585)
chr1 (389-461)||(37422175-37422247)
chr1 (379-455)||(28698549-28698625)
chr1 (535-589)||(14667018-14667072)
chr1 (436-483)||(14703133-14703180)
[»] chr2 (32 HSPs)
chr2 (11-600)||(9020493-9021065)
chr2 (9-470)||(9026421-9026873)
chr2 (11-450)||(8988084-8988522)
chr2 (28-456)||(9031707-9032126)
chr2 (372-662)||(30731997-30732287)
chr2 (122-470)||(9016238-9016583)
chr2 (267-484)||(8973195-8973414)
chr2 (380-599)||(30733985-30734205)
chr2 (254-464)||(9023319-9023528)
chr2 (114-363)||(8996098-8996339)
chr2 (279-450)||(8984588-8984760)
chr2 (258-484)||(9030274-9030499)
chr2 (377-584)||(32918074-32918281)
chr2 (254-470)||(8992018-8992235)
chr2 (376-584)||(43850042-43850250)
chr2 (308-484)||(2841023-2841201)
chr2 (299-450)||(8979237-8979389)
chr2 (86-251)||(9023133-9023294)
chr2 (90-219)||(8991882-8992013)
chr2 (89-219)||(8973044-8973176)
chr2 (133-412)||(8975440-8975724)
chr2 (380-464)||(9008018-9008102)
chr2 (385-521)||(19232369-19232504)
chr2 (390-484)||(10763884-10763978)
chr2 (272-328)||(9007956-9008012)
chr2 (124-219)||(9030166-9030262)
chr2 (385-484)||(6471715-6471813)
chr2 (24-86)||(8996030-8996092)
chr2 (387-478)||(35701893-35701984)
chr2 (411-484)||(17225669-17225743)
chr2 (414-484)||(17275862-17275932)
chr2 (386-421)||(39814115-39814150)
[»] chr4 (15 HSPs)
chr4 (308-585)||(11652298-11652575)
chr4 (308-602)||(3461031-3461325)
chr4 (375-591)||(49106428-49106644)
chr4 (376-599)||(49108524-49108747)
chr4 (374-521)||(50077168-50077315)
chr4 (384-484)||(26984673-26984773)
chr4 (384-484)||(26998746-26998846)
chr4 (384-484)||(48205832-48205932)
chr4 (385-483)||(41013553-41013651)
chr4 (411-483)||(21503706-21503778)
chr4 (390-481)||(26982549-26982637)
chr4 (390-443)||(6431957-6432010)
chr4 (379-483)||(49533638-49533735)
chr4 (419-484)||(35806165-35806230)
chr4 (388-424)||(34481155-34481191)
[»] chr8 (13 HSPs)
chr8 (380-591)||(10944298-10944509)
chr8 (308-484)||(41841158-41841335)
chr8 (383-599)||(40054312-40054528)
chr8 (377-484)||(44878977-44879084)
chr8 (377-484)||(44880837-44880944)
chr8 (383-482)||(37682057-37682156)
chr8 (385-582)||(37679757-37679953)
chr8 (308-483)||(42555090-42555266)
chr8 (308-456)||(42220880-42221027)
chr8 (307-456)||(42091944-42092093)
chr8 (400-454)||(44582870-44582924)
chr8 (376-426)||(42872514-42872564)
chr8 (436-484)||(44583110-44583157)
[»] chr5 (8 HSPs)
chr5 (308-484)||(1716457-1716634)
chr5 (376-599)||(7524961-7525184)
chr5 (342-484)||(3643599-3643741)
chr5 (387-482)||(4103249-4103344)
chr5 (416-482)||(5350672-5350738)
chr5 (390-454)||(19261152-19261216)
chr5 (385-484)||(16037861-16037958)
chr5 (436-483)||(13636365-13636412)
[»] chr6 (8 HSPs)
chr6 (374-521)||(10795859-10796006)
chr6 (374-521)||(10791621-10791768)
chr6 (383-482)||(30521242-30521341)
chr6 (385-483)||(8875691-8875789)
chr6 (426-522)||(11333273-11333369)
chr6 (436-581)||(13136607-13136752)
chr6 (509-583)||(10509477-10509551)
chr6 (390-484)||(21216032-21216126)
[»] chr7 (2 HSPs)
chr7 (383-484)||(27134511-27134612)
chr7 (389-482)||(8128149-8128241)
[»] chr3 (1 HSPs)
chr3 (385-431)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (434-482)||(5447-5495)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Original strand, 33987699 - 33988208
Alignment:
Q  9 ataattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaa 108  Q
    |||||||||||||| || |||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||    
T  33987699 ataattctaacagacacgcacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagccttacccggttagtccatcaacaaa 33987797  T
Q  109 agcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgta 208  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||    
T  33987798 agcaagggataagataagaatcagatcatgatattttgctgtaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgta 33987897  T
Q  209 tctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaa-gctatttcaaaaa 307  Q
    ||||||||    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || |||||||||    
T  33987898 tctactct----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaacatgcaaccctgtttcaaaaa 33987993  T
Q  308 agtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||||    
T  33987994 agtcccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggc 33988093  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacnnnnnnnagggggagaggtcac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||       ||||||||||| ||     
T  33988094 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattacttttttaagggggagaggccat 33988193  T
Q  507 ttcagtagcttgcta 521  Q
    |||| ||||||||||    
T  33988194 ttcaatagcttgcta 33988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 372 - 664
Target Start/End: Complemental strand, 14654458 - 14654166
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654458 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14654359  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  14654358 gatattaaattacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggc 14654259  T
Q  572 tcaccccaccaattcaagttaaatttttattctggttcaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgccta 664  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654258 tcaccccaccaattcaagttaaatttttattctggtttaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgccta 14654166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 372 - 664
Target Start/End: Complemental strand, 14664249 - 14663957
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664249 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14664150  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  14664149 gatattaaattacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggc 14664050  T
Q  572 tcaccccaccaattcaagttaaatttttattctggttcaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgccta 664  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664049 tcaccccaccaattcaagttaaatttttattctggtttaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgccta 14663957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 372 - 662
Target Start/End: Complemental strand, 14669827 - 14669536
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669827 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14669728  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       |||||||||||  |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||     
T  14669727 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcattggtctggt 14669628  T
Q  572 tcaccccaccaattcaag-ttaaatttttattctggttcaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgcc 662  Q
     ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |   |||| ||| |||||| |||||||||||||||||    
T  14669627 gcaccccaccaattcaagtttaaatttttattctggttcatatctggcacatggttaccgtgttcatatcattaacataatcctttcctgcc 14669536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 376 - 624
Target Start/End: Original strand, 14683743 - 14683992
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14683842  T
Q  476 ttaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcac 575  Q
    |||||||||       |||||||||||  |||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||  |||    
T  14683843 ttaaattacttttttgagggggagaggcaactttagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcattggcttggtgcac 14683942  T
Q  576 cccaccaattc-aagttaaatttttattctggttcaaatctggcacatgg 624  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  14683943 cccaccaatccaaagttaaatttttattctggttcatatctggcacatgg 14683992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 372 - 662
Target Start/End: Original strand, 14706077 - 14706368
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706077 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14706176  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       |||||||||||  |||| ||||||||||||| | ||||||||||||| | | ||||||||||||||| ||||||  ||||    
T  14706177 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgttgactatgtgttgcactataacattggtctggc 14706276  T
Q  572 tcaccccaccaattcaag-ttaaatttttattctggttcaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgcc 662  Q
     ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |   ||||  |  |||||| |||||||||||||||||    
T  14706277 gcaccccaccaattcaagtttaaatttttattctggttcatatctggcacatggttaccgtgttaaaatcattaacataatcctttcctgcc 14706368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 372 - 591
Target Start/End: Original strand, 14716280 - 14716499
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14716280 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacac 14716379  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       |||||||||||  |||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||     
T  14716380 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattggcttggt 14716479  T
Q  572 tcaccccaccaattcaagtt 591  Q
     |||||||||||||||||||    
T  14716480 gcaccccaccaattcaagtt 14716499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 372 - 592
Target Start/End: Original strand, 14708567 - 14708787
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708567 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14708666  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       ||||||||||||||||| ||||||||||||  || | |||  ||||||| ||||||||||||||| ||||||||| ||||    
T  14708667 gatattaaattacttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggc 14708766  T
Q  572 tcaccccaccaattcaagtta 592  Q
     ||||||||||||||||||||    
T  14708767 gcaccccaccaattcaagtta 14708787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 383 - 591
Target Start/End: Original strand, 14652525 - 14652733
Alignment:
Q  383 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  483 acnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccacca 582  Q
    ||       ||||||||| | || || ||||||||||||| || | ||| | ||||  |||||| ||||||||||||||||||| |||| ||||||||||    
T  14652625 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14652724  T
Q  583 attcaagtt 591  Q
    |||||||||    
T  14652725 attcaagtt 14652733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 383 - 591
Target Start/End: Original strand, 14662316 - 14662524
Alignment:
Q  383 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  483 acnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccacca 582  Q
    ||       ||||||||| | || || ||||||||||||| || | ||| | ||||  |||||| ||||||||||||||||||| |||| ||||||||||    
T  14662416 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14662515  T
Q  583 attcaagtt 591  Q
    |||||||||    
T  14662516 attcaagtt 14662524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 373 - 584
Target Start/End: Original strand, 14679849 - 14680060
Alignment:
Q  373 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 472  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14679948  T
Q  473 atattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggct 572  Q
    ||||||||||||       ||||||||| | ||  | ||||||||||||| || | ||||| |||| ||||||| ||||||||| ||||||||||||||     
T  14679949 atattaaattacttttttgagggggagaagccatattagtagcttgctactaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcg 14680048  T
Q  573 caccccaccaat 584  Q
    ||||| ||||||    
T  14680049 cacccgaccaat 14680060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 376 - 578
Target Start/End: Original strand, 14681592 - 14681794
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14681691  T
Q  476 ttaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcac 575  Q
    |||||||||       ||||||||| | || || ||||||||||||| || | ||| | |||||  |||||| ||||||||||||||||| ||||| |||    
T  14681692 ttaaattacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacac 14681791  T
Q  576 ccc 578  Q
    |||    
T  14681792 ccc 14681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 373 - 578
Target Start/End: Original strand, 14674471 - 14674676
Alignment:
Q  373 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 472  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14674570  T
Q  473 atattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggct 572  Q
    ||||||||||||       ||||||||| | || || ||||||||||||| || | ||| | |||||  |||||| ||||||||||||||||| |||||     
T  14674571 atattaaattacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggca 14674670  T
Q  573 cacccc 578  Q
    ||||||    
T  14674671 cacccc 14674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 14676625 - 14676727
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14676724  T
Q  476 tta 478  Q
    |||    
T  14676725 tta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 376 - 599
Target Start/End: Complemental strand, 38175644 - 38175421
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgata 38175545  T
Q  476 ttaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcac 575  Q
    |||||||||       |||||||||   ||| ||||||||||||| |  |   | |  ||||||||  ||||||||||||||  |||  || |||| |||    
T  38175544 ttaaattacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcac 38175445  T
Q  576 cccaccaattcaagttaaattttt 599  Q
    ||||||||||| |||| |||||||    
T  38175444 cccaccaattctagttcaattttt 38175421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 380 - 484
Target Start/End: Complemental strand, 14667221 - 14667117
Alignment:
Q  380 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  480 attac 484  Q
    |||||    
T  14667121 attac 14667117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 374 - 484
Target Start/End: Complemental strand, 28366315 - 28366204
Alignment:
Q  374 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg-gaccaatggttcacacg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacg 28366216  T
Q  473 atattaaattac 484  Q
    ||||||||||||    
T  28366215 atattaaattac 28366204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 386 - 484
Target Start/End: Complemental strand, 11872585 - 11872487
Alignment:
Q  386 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattac 11872487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  389 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaa 461  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 28698549 - 28698625
Alignment:
Q  379 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 455  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||| |||||||| |||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 14667072 - 14667018
Alignment:
Q  535 gtgtcgccaatgtgttgcactatagcattggcttggctcaccccaccaattcaag 589  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  14667072 gtgttgccagtgtgttgcactatagcattggcttggcgcaccccaccaatccaag 14667018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 14703133 - 14703180
Alignment:
Q  436 agtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||||||||| |||||||||||||||| || |||||||||||||||||    
T  14703133 agtttaatatttgatatgtggaccaatagtccacacgatattaaatta 14703180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 11 - 600
Target Start/End: Original strand, 9020493 - 9021065
Alignment:
Q  11 aattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaag 110  Q
    |||||||||| | |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  9020493 aattctaacaaacacacacaatagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatacccttagccggttagcccatcaacaaaag 9020592  T
Q  111 caagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatc 210  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  9020593 caaggaataagataagaatccgatcatgatattttgctttaagacgagaatatcaatttaatttttggcaattcaccatg-tggccaatgtgtatgtatc 9020691  T
Q  211 tactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagt 310  Q
    ||||    | ||||||||| ||||| ||||||||||||||||||||||||||| ||              ||||||||||||||||||||||||||||||    
T  9020692 tact----ttgattgatgataatgttttaagaataaagaaaacaaaggaggaaaaa--------------agtttaccaagcaagctatttcaaaaaagt 9020773  T
Q  311 cccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaa 409  Q
    || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  9020774 cctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaa 9020873  T
Q  410 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattacnnnnnnnagggggagaggtcactt 508  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||| ||  |||||||||||       |||| |||||| || ||    
T  9020874 gatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgagaggccattt 9020973  T
Q  509 cagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccaccaattcaagtt-aaattttta 600  Q
    || || |||||||   | | |||   ||||| || |||||||||||||| |||| || ||||  ||||||||||||||||||| |||||||||    
T  9020974 caataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcatagg-ttggtgcaccccaccaattcaagttcaaattttta 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 9026421 - 9026873
Alignment:
Q  9 ataattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaa 108  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  9026421 ataatactaacagacacacacaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaa 9026520  T
Q  109 agcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgta 208  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||    
T  9026521 agcaagggataagaaaagaataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgta 9026620  T
Q  209 --tctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaa 306  Q
      | ||||||    ||||||||| ||||| ||||||||||||||| |||||     | ||||    ||||||| ||| ||||||||||||| ||||||||    
T  9026621 tttttactct----gattgatgataatgttttaagaataaagaaatcaaag-----aaaaag---gaggaagaaagtctaccaagcaagctgtttcaaaa 9026708  T
Q  307 aagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttgg 405  Q
    |||||||| |||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  9026709 aagtcccatatcggttgttcaagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttgg 9026808  T
Q  406 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcaca 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||||    
T  9026809 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcaca 9026873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 8988084 - 8988522
Alignment:
Q  11 aattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaag 110  Q
    |||| ||||||| ||||||||||||||| |||||||||     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8988084 aattataacagacacacacaacagtggctctcaaaaac----gaatgaacacaaagatgaaagatataatagccttagccggttagcccatcaacaaaag 8988179  T
Q  111 caagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||      
T  8988180 caagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaattttatttttggcaattcatcatgatggcctatgtgtatgtact 8988279  T
Q  211 tac-tctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg--ttaggaagagagtttaccaagcaagctatttcaaaaa 307  Q
    ||| |   || ||||||||| ||||| |||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||| | ||||||||     
T  8988280 tacgtactat-gattgatgataatgttttaagaataaggaaaacaaaggaggaagaaagtgttttaggaagtgagtctaccaagcaagttgtttcaaaat 8988378  T
Q  308 agtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    ||||||||||||  |||||| ||||||||||| ||||||||||||||||||| ||||||||||  |||||||||||| ||||| |||| |||||||||||    
T  8988379 agtcccacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttttggc 8988478  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgat 450  Q
     ||||||||||||||||| |||||||||||||||||||| ||||    
T  8988479 gaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 456
Target Start/End: Original strand, 9031707 - 9032126
Alignment:
Q  28 acaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataaga 127  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  9031707 acaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaaga 9031806  T
Q  128 atcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgta--tctactctgatagattg 225  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||  | ||||||    |||||    
T  9031807 ataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtatttttactct----gattg 9031902  T
Q  226 atgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgtt 325  Q
    |||| ||||| ||||||||||||||| |||||     | ||||    ||||||| ||| ||||||||||||| ||||||||||||| || |||| |||||    
T  9031903 atgataatgttttaagaataaagaaatcaaag-----aaaaag---gaggaagaaagtctaccaagcaagctgtttcaaaaaagtctcatatcgattgtt 9031994  T
Q  326 catgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 424  Q
    || ||||||||||| ||||||||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9031995 caagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtat 9032094  T
Q  425 ctgttcttatcagtttaatatctgatatgtgg 456  Q
    ||||||||||||||||||||||||||||||||    
T  9032095 ctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 372 - 662
Target Start/End: Original strand, 30731997 - 30732287
Alignment:
Q  372 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30731997 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacac 30732096  T
Q  472 gatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggc 571  Q
    |||||||||||||       |||||| |||| |||||  |||||||||||| || | ||| |||||| | ||||||||||||||||||||||||  |||     
T  30732097 gatattaaattacttttttgagggggggaggccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggt 30732196  T
Q  572 tcaccccaccaattcaag-ttaaatttttattctggttcaaatctggcacatgggtgttgtgtccatttcattagcataatcctttcctgcc 662  Q
     ||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |   |||| ||| |||||| |||||||||||||||||    
T  30732197 gcaccccaccaattcaagtttaaatttttattctggttcatatctggca-atggttaccgtgttcatatcattatcataatcctttcctgcc 30732287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 122 - 470
Target Start/End: Original strand, 9016238 - 9016583
Alignment:
Q  122 ataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatag 221  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||  ||  ||||| |||||||||||| ||||||         
T  9016238 ataagagtcagatcatgatattttgctataagacaagaatatcaatttaatttttttcaattcataatcgtggcccatgtgtatgtatttactct----a 9016333  T
Q  222 attgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggt 321  Q
    |||||||| ||||| |||||||||||| |||||||| || | ||||||||||||||||||   ||||||||| ||| ||||||| | |||||||||| ||    
T  9016334 attgatgataatgttttaagaataaag-aaacaaagtagaacgaaagtgttaggaagaga--ctaccaagcatgctgtttcaaagatgtcccacatcagt 9016430  T
Q  322 tgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgta 420  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||  ||||||| ||||||||||||  ||| |||||||||||||||||| ||||    
T  9016431 tgttcaagaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgta 9016530  T
Q  421 gtatctgttcttatc---agtttaatatctgatatgtggaccaatggttcaca 470  Q
    |||||||||||||||   |||||||||||||||  |||| ||||||| |||||    
T  9016531 gtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcaca 9016583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 267 - 484
Target Start/End: Original strand, 8973195 - 8973414
Alignment:
Q  267 agtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataag 365  Q
    ||||||||||||||||| |||||||||| || |||||||||||| |||||||| || |||  ||||| |||||| |||||||||||||||||| ||||||    
T  8973195 agtgttaggaagagagtctaccaagcaaactgtttcaaaaaagttccacatcgattattccagaaagtaagtgaagggatgtgatatataaaagcataag 8973294  T
Q  366 cgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggt 465  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||     
T  8973295 cgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatggg 8973394  T
Q  466 tcac-acgatattaaattac 484  Q
    |||| || ||||||||||||    
T  8973395 tcacaacaatattaaattac 8973414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 380 - 599
Target Start/End: Original strand, 30733985 - 30734205
Alignment:
Q  380 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 479  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  480 attacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcacccca 579  Q
    |||||       ||||||||| | || || ||||||||||||| || | ||| | ||||||||| || |||||||||| ||||||||||||| |||||||    
T  30734085 attactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcacccca 30734184  T
Q  580 ccaattcaagtt-aaattttt 599  Q
    ||||| |||||| ||||||||    
T  30734185 ccaatccaagttcaaattttt 30734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 254 - 464
Target Start/End: Original strand, 9023319 - 9023528
Alignment:
Q  254 aaaggaggaagaaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtgagg-gatgtgat 350  Q
    |||||||||||||||||||  ||||||||||| ||||||||||    ||  ||||||||||||||||||||||||| |||| ||||||| | ||||||||    
T  9023319 aaaggaggaagaaagtgttttaggaagagagtctaccaagcaa----ttcaaaaaaagtcccacatcggttgttcaagaaatcaagtgaagagatgtgat 9023414  T
Q  351 atataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 450  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  451 atgtggaccaatgg 464  Q
      |||| |||||||    
T  9023515 tagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 114 - 363
Target Start/End: Original strand, 8996098 - 8996339
Alignment:
Q  114 gggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctac 213  Q
    ||||||||||| |||||||||||| ||||||||| |       ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8996098 gggataagatacgaatcagatcataatattttgctt-------agaatattaatttaatttttggcaattcaccatgatggcctatgtttatgtatctac 8996190  T
Q  214 tctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg--ttaggaagagagtttaccaagcaagctatttcaaaaaagtc 311  Q
    | |    ||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| | |||||||| ||||    
T  8996191 tat----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttttaggaagagagtctaccaagcaagttgtttcaaaatagtc 8996286  T
Q  312 ccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccata 363  Q
    ||||||||  |||||| |||||||| || ||||||||||||||||||| ||||    
T  8996287 ccacatcgactgttcaagaaagcaactgaagggatgtgatatataaaagcata 8996339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 279 - 450
Target Start/End: Original strand, 8984588 - 8984760
Alignment:
Q  279 agagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctt 377  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||| ||  ||| ||    
T  8984588 agagtctaccaaacaagctatttcaaaaaagtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatt 8984687  T
Q  378 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  8984688 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 258 - 484
Target Start/End: Original strand, 9030274 - 9030499
Alignment:
Q  258 gaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataa 356  Q
    |||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||||||||  |||||| ||| |||||||| ||||||||||||||||    
T  9030274 gaggaagaaagtgttaggaagag--tctaccaagcaagctgtttcaagaaagtcccacatcgactgttcaagaatgcaagtgaagggatgtgatatataa 9030371  T
Q  357 aaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 456  Q
    || ||||||| ||  ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||    
T  9030372 aagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtgg 9030471  T
Q  457 accaatggttcacacgatattaaattac 484  Q
      |||||| ||||||  |||||||||||    
T  9030472 ctcaatgggtcacacagtattaaattac 9030499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 377 - 584
Target Start/End: Original strand, 32918074 - 32918281
Alignment:
Q  377 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 32918173  T
Q  477 taaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcacc 576  Q
    ||||||||       ||||||||| | || | ||||||||||||||    | |||  |||||||| |||| |||||||||||||||| | ||||| ||||    
T  32918174 taaattacttttttgagggggagaagccattgcagtagcttgctactctgcttctcttgtgtcgctaatgcgttgcactatagcattagtttggcgcacc 32918273  T
Q  577 ccaccaat 584  Q
     |||||||    
T  32918274 tcaccaat 32918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 254 - 470
Target Start/End: Original strand, 8992018 - 8992235
Alignment:
Q  254 aaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatat 352  Q
    ||||||| |||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| |||| ||||| |||||| ||||||||||||    
T  8992018 aaaggagaaagagagtgttaggaagagagtctaccaagcaaactgtttcaaaaaagtcccacattggttattcaagaaagtaagtgaagggatgtgatat 8992117  T
Q  353 ataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatat 452  Q
    |||||| ||||||||||  | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||||||      
T  8992118 ataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgatta 8992217  T
Q  453 gtggaccaatggttcaca 470  Q
    |||| ||||||| |||||    
T  8992218 gtggcccaatgggtcaca 8992235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 376 - 584
Target Start/End: Original strand, 43850042 - 43850250
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgata 43850141  T
Q  476 ttaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcac 575  Q
    |||||| ||       ||||||||||||||||||| ||||||||||   | | |||  ||||||||| ||| |||||||||| |||| |||||||| |||    
T  43850142 ttaaatcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcataggcttggcgcac 43850241  T
Q  576 cccaccaat 584  Q
    || ||||||    
T  43850242 ccaaccaat 43850250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 308 - 484
Target Start/End: Complemental strand, 2841201 - 2841023
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaa-ctcatacctttctcggccttttgg 405  Q
    |||||||||||||||||| | ||||||||||||| |||||||| |||||||| || | |||||  | | ||| |  ||||||||||||||||||||||||    
T  2841201 agtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttgg 2841102  T
Q  406 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  2841101 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattac 2841023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 299 - 450
Target Start/End: Original strand, 8979237 - 8979389
Alignment:
Q  299 tttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcgg 397  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||  |||||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  8979237 tttcaaaaaagtcccacattggttgttcaaggaatcaagtgaagggacttgatatataaaagcataagcaagttcatctttcaactcatacctttctcgg 8979336  T
Q  398 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8979337 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 9023133 - 9023294
Alignment:
Q  86 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||    
T  9023133 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatactttgctttaagtcaagaatatcaatttaatttttggcaattca 9023232  T
Q  186 ccatgatggcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaa 251  Q
     | |||||||||| |||||||||| |||| |    ||||||| | ||||| |||||||||||||||    
T  9023233 tcgtgatggcctaggtgtatgtatttactat----gattgatcataatgttttaagaataaagaaa 9023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 8991882 - 8992013
Alignment:
Q  90 cggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcacc 187  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| |||      
T  8991882 cggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatatcaatttaatttttgcttcaattcata 8991981  T
Q  188 atgatggcctatgtgtatgtatctactctgat 219  Q
    |||||||||||||||||||||| |||||||||    
T  8991982 atgatggcctatgtgtatgtatttactctgat 8992013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 8973044 - 8973176
Alignment:
Q  89 ccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcac 186  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||   ||| |||     
T  8973044 ccggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgcttcaagacaagaatatcaatttaatttttgcttcaattcat 8973143  T
Q  187 catgatggcctatgtgtatgtatctactctgat 219  Q
     ||| ||||||||||||| |||| |||||||||    
T  8973144 aatggtggcctatgtgtaagtatttactctgat 8973176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 133 - 412
Target Start/End: Original strand, 8975440 - 8975724
Alignment:
Q  133 atcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatagattgatgacaa 232  Q
    |||||||||||||   ||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||    |||||| ||    
T  8975440 atcatgatatttttgtttaagactagaatatcaatttaattgttggcaattcatcatgatggcctatgtgtatgtatttactctgat----tgatgataa 8975535  T
Q  233 tgtattaagaataaagaaa------acaaaggagg---aagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttg 323  Q
    ||| |||||||||| ||||      | ||| ||     |||| |  |  ||||||||||||||||||||||| | ||||||||||||||| ||||   ||    
T  8975536 tgttttaagaataacgaaatttgtaagaaaagaaatcaaagataaagg-aggaagagagtttaccaagcaagttgtttcaaaaaagtcccccatcaactg 8975634  T
Q  324 ttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagat 412  Q
    || | |||| ||||||| |||||||||||||||||| ||||||||||  || |||||||||||||  |||||  ||||||||||||||||    
T  8975635 tttaagaaatcaagtgaagggatgtgatatataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 9008018 - 9008102
Alignment:
Q  380 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatgg 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgg 9008102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 385 - 521
Target Start/End: Complemental strand, 19232504 - 19232369
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||| ||| |||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  485 nnnnnnnagggggagaggtcacttcagtagcttgcta 521  Q
           ||||||||| | ||||||| ||||||||||    
T  19232405 ctttttgagggggagaagccacttcaatagcttgcta 19232369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 10763978 - 10763884
Alignment:
Q  390 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattac 10763884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 9007956 - 9008012
Alignment:
Q  272 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007956 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 9008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 9030166 - 9030262
Alignment:
Q  124 aagaatcagatcatgatattttgccttaagacaagaatatcaatttaa-tttttggcaaatcaccatgatggcctatgtgtatgtatctactctgat 219  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| | ||| |||||||||    
T  9030166 aagaatcagatcgtgatatttggctttaagacaagaatatcaatttaattttttgacaattcatcatgatggcctatgtgtgtctatttactctgat 9030262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 6471813 - 6471715
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||  || | ||||| ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 8996030 - 8996092
Alignment:
Q  24 acacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagcctt 86  Q
    ||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  8996030 acacacaactgtggcactcaaaaacaaatgaaagaacacaaagatgaaagatataataacctt 8996092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 35701893 - 35701984
Alignment:
Q  387 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 478  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||| ||||    |||||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatatta 35701984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 17225743 - 17225669
Alignment:
Q  411 atcaagtgtagtatctgttctt-atcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    ||||||||||||||||||| || ||| |||||||| ||||||| ||| ||||||  ||| |||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattac 17225669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 484
Target Start/End: Original strand, 17275862 - 17275932
Alignment:
Q  414 aagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||||||  ||||||||||||| ||| | | |||||||| ||||||| |||||||||||| ||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattac 17275932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 421
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  386 tacctttctcggccttttggctaagatcaagtgtag 421  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 308 - 585
Target Start/End: Complemental strand, 11652575 - 11652298
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| ||||||||||| |||| |   ||||||| |||||||||||||||||||||||||||    
T  11652575 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggc 11652476  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacnnnnnnnagggggagaggtcac 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||        ||||||||| | |||    
T  11652475 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttttgagggggagaagccac 11652376  T
Q  507 ttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccaccaatt 585  Q
    | || ||||||||||   | | ||||| |||||||| |||||||||||||| |||| ||| |||| |||||||||||||    
T  11652375 tccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgcatgggc-tggcgcaccccaccaatt 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 308 - 602
Target Start/End: Complemental strand, 3461325 - 3461031
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    |||||||||||| ||||  | ||||||||||||| ||||| || ||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  3461325 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggc 3461226  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacnnnnnnnagggggagaggtcac 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||       ||||||||| | ||     
T  3461225 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttaagggggagaagccat 3461126  T
Q  507 ttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccaccaattcaagttaaatttttatt 602  Q
    |||| ||||||||||   |   ||| | |||||| | ||| |||||||||| |||| ||| |||| |||||||||||| |||||| ||||||||||    
T  3461125 ttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcataggc-tggcacaccccaccaatacaagttgaatttttatt 3461031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 375 - 591
Target Start/End: Complemental strand, 49106644 - 49106428
Alignment:
Q  375 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgat 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 49106545  T
Q  475 attaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctca 574  Q
    ||||||||||       ||||||||| ||||| | |||||||||||||  |   |||| ||||||||  |||||||||||||| ||||  ||| ||| ||    
T  49106544 attaaattacttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgca 49106445  T
Q  575 ccccaccaattcaagtt 591  Q
    |||||||||||| ||||    
T  49106444 ccccaccaattctagtt 49106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 376 - 599
Target Start/End: Complemental strand, 49108747 - 49108524
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||    
T  49108747 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgata 49108648  T
Q  476 ttaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcac 575  Q
    |||||||||       ||||||||| ||||   |||||||||||||   | | |||| ||||||||  |||||||||||||| ||||  ||| ||| |||    
T  49108647 ttaaattacttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgcac 49108548  T
Q  576 cccaccaattcaagttaaattttt 599  Q
    ||||||||| | |||| |||||||    
T  49108547 cccaccaatcctagtttaattttt 49108524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 374 - 521
Target Start/End: Complemental strand, 50077315 - 50077168
Alignment:
Q  374 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacga 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatga 50077216  T
Q  474 tattaaattacnnnnnnnagggggagaggtcacttcagtagcttgcta 521  Q
    |||||||||||       ||||||||| | ||||||| ||||||||||    
T  50077215 tattaaattacttttttgagggggagaagccacttcaatagcttgcta 50077168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 26984773 - 26984673
Alignment:
Q  384 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  484 c 484  Q
    |    
T  26984673 c 26984673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 26998846 - 26998746
Alignment:
Q  384 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  484 c 484  Q
    |    
T  26998746 c 26998746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 384 - 484
Target Start/End: Original strand, 48205832 - 48205932
Alignment:
Q  384 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  484 c 484  Q
    |    
T  48205932 c 48205932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 483
Target Start/End: Complemental strand, 41013651 - 41013553
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaatta 41013553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 411 - 483
Target Start/End: Original strand, 21503706 - 21503778
Alignment:
Q  411 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaatta 21503778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 481
Target Start/End: Original strand, 26982549 - 26982637
Alignment:
Q  390 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaat 481  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| |||||| ||||| ||||||||| ||||| || ||| ||||||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaat 26982637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  390 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 443  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 483
Target Start/End: Complemental strand, 49533735 - 49533638
Alignment:
Q  379 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 478  Q
    |||| |||||||||||||||| || ||||||||||||||| | |||||||||||||     |||||||||||||||    |||| | |||||||||||||    
T  49533735 caacccatacctttctcggccctt-ggctaagatcaagtgca-tatctgttcttat-----taatatctgatatgttactcaataggtcacacgatatta 49533643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 35806165 - 35806230
Alignment:
Q  419 tagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||| |||||||||||||||||||| ||||||||   | ||||  || ||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattac 35806230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  388 cctttctcggccttttggctaagatcaagtgtagtat 424  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 380 - 591
Target Start/End: Complemental strand, 10944509 - 10944298
Alignment:
Q  380 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 479  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  480 attacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcacccca 579  Q
    |||||       | ||||||| | || || ||||||||||||| || | ||||| ||||| | | || |||||||||||||||||| ||||| |||||||    
T  10944409 attacttttttgatggggagaagccattttagtagcttgctactaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcacccca 10944310  T
Q  580 ccaattcaagtt 591  Q
    ||||||||||||    
T  10944309 ccaattcaagtt 10944298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 308 - 484
Target Start/End: Complemental strand, 41841335 - 41841158
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| |||||||| || |||| |   |||||||||||||||||||||||||||||||||||    
T  41841335 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggc 41841236  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  41841235 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattac 41841158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 383 - 599
Target Start/End: Original strand, 40054312 - 40054528
Alignment:
Q  383 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T
Q  483 acnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccacca 582  Q
    ||       ||||||||||| ||||||| ||||||||||   | | ||||  |||||||  |||||||||||||| ||||  ||||||| ||||||||||    
T  40054412 acttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcaccccacca 40054511  T
Q  583 attcaagttaaattttt 599  Q
    || | |||| |||||||    
T  40054512 atactagttcaattttt 40054528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 377 - 484
Target Start/End: Original strand, 44878977 - 44879084
Alignment:
Q  377 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44879076  T
Q  477 taaattac 484  Q
    ||||||||    
T  44879077 taaattac 44879084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 377 - 484
Target Start/End: Complemental strand, 44880944 - 44880837
Alignment:
Q  377 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44880845  T
Q  477 taaattac 484  Q
    ||||||||    
T  44880844 taaattac 44880837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 37682057 - 37682156
Alignment:
Q  383 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 385 - 582
Target Start/End: Original strand, 37679757 - 37679953
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  485 nnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccacca 582  Q
           ||||||||||| |||  | |||||||||||   | |||| | |||||||||  ||||||||||||||||| |||  |||| ||||||||||    
T  37679857 tttattgagggggagaggccaccacggtagcttgctattgggcctc-tctgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 308 - 483
Target Start/End: Complemental strand, 42555266 - 42555090
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    |||||||||||| | ||| | ||||||||||||| |||||||||||||||||||  |||  ||  || |||||||||||||||||||| |  ||||||||    
T  42555266 agtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatcttttggc 42555167  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||||||||||| || ||||||| ||||||||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  42555166 taagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 42221027 - 42220880
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgagggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 407  Q
    |||||||||||| | ||||  ||||| |||||  |||| ||| |||||||| || | ||||| | | |||||||||||||| ||| |||| |||||||||    
T  42221027 agtcccacatcgctagttctagaaagtaagtggtggatatgagatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggct 42220928  T
Q  408 aagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 456  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  42220927 aagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 307 - 456
Target Start/End: Original strand, 42091944 - 42092093
Alignment:
Q  307 aagtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttgg 405  Q
    ||||||||||||||| ||||| |||||||| |||| |||  ||| ||||||||||| |||| |   ||||||| |||||||||||||||  ||||||||     
T  42091944 aagtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg- 42092042  T
Q  406 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 456  Q
    |||| || ||||||| ||| |||||||||||||||||||||||||||||||    
T  42092043 ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 44582870 - 44582924
Alignment:
Q  400 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 44582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 426  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 44583110 - 44583157
Alignment:
Q  436 agtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||    
T  44583110 agtttaatatctgatatgtgaac-aatggtacacacgatattaaattac 44583157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 308 - 484
Target Start/End: Complemental strand, 1716634 - 1716457
Alignment:
Q  308 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 406  Q
    |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||  | |||||||  ||||||| |||||||||||||||||||||||||||    
T  1716634 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 1716536  T
Q  407 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggacc-aatggttcacacgatattaaattac 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  1716535 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattac 1716457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 376 - 599
Target Start/End: Original strand, 7524961 - 7525184
Alignment:
Q  376 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 475  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgata 7525060  T
Q  476 ttaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcac 575  Q
    |||||||||       ||||||||||| | | | ||||||||||| |  |   |||  ||||||| | ||| |||||||||| |||| |||| ||| |||    
T  7525061 ttaaattacttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcac 7525160  T
Q  576 cccaccaattcaagttaaattttt 599  Q
    ||||||||||  |||| |||||||    
T  7525161 cccaccaattttagtttaattttt 7525184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 342 - 484
Target Start/End: Original strand, 3643599 - 3643741
Alignment:
Q  342 ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 441  Q
    |||||||  |||||||| || ||||||||    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643599 ggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 3643698  T
Q  442 atatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||    
T  3643699 atatctgatatgtggcccattgggtcacacgatattaaattac 3643741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 4103249 - 4103344
Alignment:
Q  387 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaatt 4103344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 482
Target Start/End: Original strand, 5350672 - 5350738
Alignment:
Q  416 gtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    ||||||||||| || ||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatt 5350738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  390 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 454  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 484
Target Start/End: Original strand, 16037861 - 16037958
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||| | ||||| ||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 13636365 - 13636412
Alignment:
Q  436 agtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  13636365 agtttaatatctgatatgtggatcaacggtccacacggtattaaatta 13636412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 7e-51; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 374 - 521
Target Start/End: Complemental strand, 10796006 - 10795859
Alignment:
Q  374 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacga 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacga 10795907  T
Q  474 tattaaattacnnnnnnnagggggagaggtcacttcagtagcttgcta 521  Q
    |||||||||||       ||||||||| | ||||||| ||||||||||    
T  10795906 tattaaattacttttttgagggggagaagccacttcaatagcttgcta 10795859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 374 - 521
Target Start/End: Complemental strand, 10791768 - 10791621
Alignment:
Q  374 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacga 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  474 tattaaattacnnnnnnnagggggagaggtcacttcagtagcttgcta 521  Q
    |||||||||||       ||||||||| | ||||||| ||||||||||    
T  10791668 tattaaattacttttttgagggggagaagccacttcaatagcttgcta 10791621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 30521242 - 30521341
Alignment:
Q  383 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 385 - 483
Target Start/End: Original strand, 8875691 - 8875789
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 483  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaatta 8875789  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 522
Target Start/End: Original strand, 11333273 - 11333369
Alignment:
Q  426 tgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctac 522  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||       ||||||||| ||||| |||||||||| ||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgagggggagaagtcacctcagtagcttactac 11333369  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 581
Target Start/End: Original strand, 13136607 - 13136752
Alignment:
Q  436 agtttaatatctgatatgtggaccaatggttcacacgatattaaattacnnnnnnnagggggagaggtcacttcagtagcttgctacgagtcctcttgtg 535  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||       || |||||  | || | ||||||||||||||    | |||  ||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggaggagccattgcagtagcttgctactctgcttctcttg 13136706  T
Q  536 tgtcgccaatgtgttgcactatagcattggcttggctcaccccacc 581  Q
    |||||| |||| |||||||||||||||| | ||||| |||||||||    
T  13136707 tgtcgctaatgcgttgcactatagcattagtttggcgcaccccacc 13136752  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 509 - 583
Target Start/End: Original strand, 10509477 - 10509551
Alignment:
Q  509 cagtagcttgctacgagtcctcttgtgtgtcgccaatgtgttgcactatagcattggcttggctcaccccaccaa 583  Q
    ||||||||||||||  | | ||||||||||||| |||| |||||||||||||||||||||||  |||||||||||    
T  10509477 cagtagcttgctactcggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaa 10509551  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 484
Target Start/End: Original strand, 21216032 - 21216126
Alignment:
Q  390 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 484  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||||||||||||| ||||||||  |||||  |||||  ||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattac 21216126  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 484
Target Start/End: Original strand, 27134511 - 27134612
Alignment:
Q  383 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  |||||||||||||||||||| | ||||  ||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  483 ac 484  Q
    ||    
T  27134611 ac 27134612  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 389 - 482
Target Start/End: Original strand, 8128149 - 8128241
Alignment:
Q  389 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| |||||||||| ||||||| |||||| ||||||||||    
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatt 8128241  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  385 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 431  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

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Target: scaffold0549 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 5447 - 5495
Alignment:
Q  434 tcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 482  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatt 5495  T

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