View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7149_high_3 (Length: 441)
Name: NF7149_high_3
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7149_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 428
Target Start/End: Complemental strand, 39397833 - 39397419
Alignment:
| Q |
14 |
caaatagaaatgtacaaaagttggtgtgataaacaagatgatcaaatgggatactatgactcattcaaaacaagaggacctaccaaagtacacatgaacg |
113 |
Q |
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| T |
39397833 |
caaatagaattgtacaaaagtaggtgtgataaacaagatgatcaaatgggatactatgacacattcaaaacaagaggatctgccaaagtacacatggaag |
39397734 |
T |
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| Q |
114 |
ccaacatcgtccatcacaaacttgctagattctgggacaatgtgattgatatgttggnnnnnnntgaactacctcgtggctttgaccaaagagccaaatg |
213 |
Q |
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| T |
39397733 |
tcaacaagatccgttacaaactcgctagattctgggacagcgtgattgatatgtttgaaaaaaatgagctaccacatgactttgaccaaagagccaaatg |
39397634 |
T |
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| Q |
214 |
ggtcaacgcttcacaattctataaacttttggctgaaccacttgatatagctgaatattataggagagggaagcatatagaaaagggtcattacatcgaa |
313 |
Q |
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| T |
39397633 |
ggtctgcgcttcacaattctataagcttttggctgaaccacttgatatagctgactattataagcaagggaagcatatggaaaagggtcattacatagaa |
39397534 |
T |
|
| Q |
314 |
catggtagagagagaaggtatgagatttttgataggtggtggaagaatagagaagttacaattggtgaggaaaataaagagagaaacaaatttgcaaggt |
413 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||| || ||||||||| | |
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| T |
39397533 |
catggtagagcgagaaggtatgagatttttgataggtggtggaagaatagagaagttactactggggaagaaaataaagagagaagcacatttgcaagtt |
39397434 |
T |
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| Q |
414 |
caacacaagattcat |
428 |
Q |
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| T |
39397433 |
caacacaagattcat |
39397419 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 44285210 - 44285165
Alignment:
| Q |
312 |
aacatggtagagagagaaggtatgagatttttgataggtggtggaa |
357 |
Q |
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| T |
44285210 |
aacatggtagagagaggagatatgagatttttgatatgtggtggaa |
44285165 |
T |
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