View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7149_high_4 (Length: 439)
Name: NF7149_high_4
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7149_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 38567741 - 38568154
Alignment:
| Q |
17 |
agcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttgga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567741 |
agcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttgga |
38567840 |
T |
|
| Q |
117 |
tgttatcaaatatagttgattttgacccacttttaaacctcaaaattattgttcaacacacttttgcatgaattttacgttcaatttttagccacagtca |
216 |
Q |
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| T |
38567841 |
tgttatcaaatatagttgattttgacccacttttaaacctcaaatttattgttcaacacacttttgcatgaattttacgttcaacttttagccacagtca |
38567940 |
T |
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| Q |
217 |
atttttgttactgtagaaccaaactcacactta---------gaagtttgcaaatttacttctgacaacataccgttcttattgagccaattgtctgttc |
307 |
Q |
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| T |
38567941 |
atttttgttactgcagaaccaaactcacacttagaagttattgaagtttgcaaatttacttctgacaacataccgttcttattgagccaattgtctgttc |
38568040 |
T |
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| Q |
308 |
aacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagt |
407 |
Q |
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| T |
38568041 |
aacaacatgcgcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagt |
38568140 |
T |
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| Q |
408 |
gttgacatcaatac |
421 |
Q |
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| T |
38568141 |
gttgacatcaatac |
38568154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 38526859 - 38527009
Alignment:
| Q |
267 |
ttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatga |
366 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38526859 |
ttctaacagcataccgttcttattgagccaatggtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatga |
38526958 |
T |
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| Q |
367 |
ttacagccatggcagcacccgacacaacaagaagtggaagtgttgacatca |
417 |
Q |
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| T |
38526959 |
taacagccatggcagcacctgacacaacaagaaatggaagtgttgacatca |
38527009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 10860016 - 10859936
Alignment:
| Q |
39 |
acatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgtt |
120 |
Q |
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|||||||||||| |||||||| |||| ||||||||||| ||| |||| |||||||||||| ||||| |||||| ||||| |
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| T |
10860016 |
acatgtatgtttggttccacttttggaa-gaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgtt |
10859936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 7262988 - 7263060
Alignment:
| Q |
67 |
tgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgatttt |
139 |
Q |
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|||||||||||| ||| ||||||||||||| ||| ||||| || || ||||||| || | |||| |||||||| |
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| T |
7262988 |
tgaggcaaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt |
7263060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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