View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7149_high_7 (Length: 250)
Name: NF7149_high_7
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7149_high_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 23870989 - 23871226
Alignment:
| Q |
13 |
aatattgcaattataagaaccaactgtgcgtaatataaaatacaaaggtgaaaacatagctcttcagcctgcttgcaactgtttcacagaggaaaaatgc |
112 |
Q |
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| T |
23870989 |
aatattgcaattataagaaccaactgtgcgtaatataaaatacaaaggtgaaaacatagctcttcagcctgcttgcaactgtttcacagaggaaaaatgc |
23871088 |
T |
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| Q |
113 |
cacttatgccattggtcaagcatgtcatgttaagatggtatctgatttgggatcctgcagcattacatcaaaaaatgttagtgtcagaaccaacttaagt |
212 |
Q |
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| T |
23871089 |
cacttatgccattggtcaagcatgtcatgttaagttggtatctgatttgggatcctgcagcataacatcaaaaaatgttagtgtcagaaccaacttaagt |
23871188 |
T |
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| Q |
213 |
ttaactgttaaacttttcaaccattaactcatcaacac |
250 |
Q |
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| T |
23871189 |
ttaactgttaaacttttcaagcattaactcatcaacac |
23871226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 23440883 - 23440759
Alignment:
| Q |
126 |
ggtcaagcatgtcatgttaagatggtatctgatttgggat-cctgcagcattacatcaaaaaatgttagtgtcagaaccaacttaagtttaactgttaaa |
224 |
Q |
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||||||||||||||||||||| |||| ||||||||||||| |||| |||| |||||| |||||||| |||||| ||||||||||| |||||| |||||| |
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| T |
23440883 |
ggtcaagcatgtcatgttaagttggtttctgatttgggattcctggtgcatgacatcacaaaatgttggtgtcaaaaccaacttaaatttaaccgttaaa |
23440784 |
T |
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| Q |
225 |
cttttcaaccattaactcatcaaca |
249 |
Q |
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| T |
23440783 |
cttttcaagcattaacacatcaaca |
23440759 |
T |
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