View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7149_low_1 (Length: 360)
Name: NF7149_low_1
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7149_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 41170805 - 41170461
Alignment:
| Q |
10 |
agaacctgtgggggatttataatagcacagaatttatccacgggatacattcctaagtttgaaatgctgcaaggggttgtacaaagcccggagttattgg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41170805 |
agaacctgtgggggatttataatagcacagaatttatccacaggatacattcctaagtttgaaatgctgcaaggggttgtacaaagcccggagttattgg |
41170706 |
T |
|
| Q |
110 |
ttttggcaaacaaaaatgataaatagagaatttcccgacattcatggcaatatatgcattcagtagtaaactcacctaaaagtccccccttgaaattctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41170705 |
ttttggcaaacaaaaatgataaatagagaatttcccaacattcatggcaatatatgcattcagtagtaaactcacctaaaagtccccccttgaaattctt |
41170606 |
T |
|
| Q |
210 |
gcggcttcaatttcccttcacgagcttttgcagctagctccttgacctaaagtaccactaatgtattaaaatttcaaataaaaatgcctaaacacaaaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41170605 |
gcggcttcaatttcccttcacgagcttttgcagctagctccttgacctaaagtaccactaatgtattaaaatttcaaataaaaatgcctaaacacaaaca |
41170506 |
T |
|
| Q |
310 |
atcaagattcctgaaaaaacattaagtaggaacccatgtcaatga |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41170505 |
atcaagattcctgaaaaaacattaagtaggaacccatgtcaatga |
41170461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University