View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7149_low_2 (Length: 352)
Name: NF7149_low_2
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7149_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 31 - 336
Target Start/End: Original strand, 30186444 - 30186753
Alignment:
| Q |
31 |
ttgggactaaaccaccaaaactatgcatataatataata-----acattaattaaagaacttagaataaaatcaacaaatcacatactggaacccatgac |
125 |
Q |
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| T |
30186444 |
ttgggactaaaccaccaaaactatgcatataatataatataataacattaattaa-gaacttagaataaaatcaacaaatcacatactggaacccatgac |
30186542 |
T |
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| Q |
126 |
tcatccttttcaacatttccatggttttgatgatgtgttctgtgactaattctcctgaaaaattcattaaagcaaaaacttgaaatttgttagaattcaa |
225 |
Q |
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| T |
30186543 |
tcatccctttcaacatttccatggttttgatgatgtgttttgtgactaattctcctgaaaaattcattaaagcaaaaacttgaaatttgttataattcaa |
30186642 |
T |
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| Q |
226 |
agtaaagtttttaccatgaaacaacatggacaaaaatgatataatgaacaatnnnnnnnnnnnnnttctagaaactatttcactcaccatccatggtatg |
325 |
Q |
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| T |
30186643 |
agtaaagttattaccatgaaacaacaaggacaaaaatgatataatgaacaataaaaaaacaaaaattctagaaactatttcactcaccatccatggtatg |
30186742 |
T |
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| Q |
326 |
gaacaagaatt |
336 |
Q |
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| T |
30186743 |
gaacaagaatt |
30186753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 25840444 - 25840525
Alignment:
| Q |
106 |
cacatactggaacccatgactcatccttttcaacatttccatggttttgatgatgtgttctgtgactaattctcctgaaaaa |
187 |
Q |
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| T |
25840444 |
cacatacaggaacccatgattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctgtaaaa |
25840525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 4705457 - 4705401
Alignment:
| Q |
126 |
tcatccttttcaacatttccatggttttgatgatgtgttctgtgactaattctcctg |
182 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
4705457 |
tcatcattttcaacatggccatggttttgatgatgtgttctatgactgattctcctg |
4705401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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