View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7149_low_5 (Length: 379)

Name: NF7149_low_5
Description: NF7149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7149_low_5
NF7149_low_5
[»] chr4 (9 HSPs)
chr4 (30-158)||(22370218-22370344)
chr4 (297-367)||(19429076-19429147)
chr4 (296-361)||(42468438-42468504)
chr4 (297-361)||(13774271-13774336)
chr4 (297-361)||(42470768-42470833)
chr4 (297-361)||(45162299-45162364)
chr4 (246-296)||(22370116-22370169)
chr4 (297-345)||(50855771-50855820)
chr4 (300-361)||(13776567-13776630)
[»] chr5 (8 HSPs)
chr5 (296-367)||(22601016-22601088)
chr5 (297-367)||(37215567-37215638)
chr5 (296-361)||(11849916-11849982)
chr5 (297-361)||(11852175-11852240)
chr5 (297-367)||(21743727-21743797)
chr5 (297-367)||(37207999-37208070)
chr5 (297-361)||(23164254-23164319)
chr5 (297-357)||(15469197-15469258)
[»] chr1 (9 HSPs)
chr1 (297-367)||(2403835-2403906)
chr1 (297-361)||(29833981-29834046)
chr1 (297-367)||(2409957-2410028)
chr1 (296-361)||(10911470-10911536)
chr1 (297-361)||(13011816-13011881)
chr1 (297-361)||(29833076-29833141)
chr1 (297-361)||(10909226-10909292)
chr1 (297-361)||(8933549-8933614)
chr1 (297-336)||(734579-734619)
[»] chr7 (14 HSPs)
chr7 (296-361)||(3935073-3935139)
chr7 (297-361)||(3932834-3932899)
chr7 (295-361)||(8731174-8731241)
chr7 (297-367)||(8733495-8733566)
chr7 (295-361)||(36464211-36464278)
chr7 (296-361)||(8414489-8414555)
chr7 (297-361)||(16496953-16497018)
chr7 (297-361)||(18395432-18395497)
chr7 (297-361)||(42678571-42678636)
chr7 (297-367)||(19789201-19789272)
chr7 (297-361)||(16535135-16535200)
chr7 (297-361)||(16630462-16630527)
chr7 (299-367)||(19786895-19786964)
chr7 (299-367)||(19093846-19093912)
[»] chr3 (2 HSPs)
chr3 (296-361)||(4533252-4533318)
chr3 (297-361)||(4530955-4531020)
[»] chr2 (10 HSPs)
chr2 (297-361)||(5164151-5164216)
chr2 (297-361)||(42275556-42275621)
chr2 (297-361)||(42277782-42277847)
chr2 (303-361)||(8995076-8995135)
chr2 (297-358)||(39816089-39816151)
chr2 (303-361)||(15730034-15730093)
chr2 (297-367)||(31486998-31487069)
chr2 (295-367)||(31489282-31489355)
chr2 (296-357)||(23860126-23860188)
chr2 (305-357)||(34576612-34576665)
[»] scaffold0098 (1 HSPs)
scaffold0098 (297-367)||(3707-3777)
[»] chr8 (5 HSPs)
chr8 (295-361)||(24519151-24519218)
chr8 (297-361)||(4877111-4877176)
chr8 (297-361)||(4879439-4879504)
chr8 (297-367)||(36379465-36379536)
chr8 (297-367)||(21268120-21268191)
[»] scaffold0599 (1 HSPs)
scaffold0599 (297-361)||(1736-1801)
[»] scaffold0050 (2 HSPs)
scaffold0050 (297-357)||(29453-29514)
scaffold0050 (297-357)||(31768-31829)
[»] scaffold0008 (1 HSPs)
scaffold0008 (297-361)||(88466-88531)
[»] chr6 (1 HSPs)
chr6 (299-357)||(20642300-20642359)
[»] scaffold1361 (1 HSPs)
scaffold1361 (297-361)||(74-140)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 22370344 - 22370218
Alignment:
Q  30 ttttccataaaaatatattgtaacatgagtatggtattgatggttgctgctgatagctctccctggtccctgagatgtgaaaatcagcacataacattat 129  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22370344 ttttccataaaaatat--tgtaacatgagtatggtattgatggttgctgctgatagctctccctggtccctgagatgtgaaaatcagcacataacattat 22370247  T
Q  130 acgtgcccgtttcttatggatttttttgg 158  Q
    |||||||||||||||||||||||||||||    
T  22370246 acgtgcccgtttcttatggatttttttgg 22370218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 19429076 - 19429147
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||| ||||||    
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatatt 19429147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 42468438 - 42468504
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  42468438 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 42468504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 13774336 - 13774271
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 13774271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 42470768 - 42470833
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 42470833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 45162364 - 45162299
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 45162299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 22370169 - 22370116
Alignment:
Q  246 tgtaacctcactttattat---atttcgattttacattcgtacatcaaattctt 296  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||||||||    
T  22370169 tgtaacctcactttattattatatttcgattttacattcgtacaacaaattctt 22370116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 50855771 - 50855820
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaata 345  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 50855820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 13776630 - 13776567
Alignment:
Q  300 ctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaa-gaaaagtt 361  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||| ||||||||    
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagtt 13776567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 22601088 - 22601016
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  22601088 ttggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatatt 22601016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 37215638 - 37215567
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||| | |||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatatt 37215567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 11849916 - 11849982
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  11849916 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 11849982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 11852175 - 11852240
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 11852240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 21743797 - 21743727
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaag-aaagtttatatt 21743727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 37208070 - 37207999
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||| | |||||||||| |||||||||||||||||| |||  |||||||| |||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatt 37207999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 23164254 - 23164319
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 23164319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaa 357  Q
    |||||||||||||||||||| |||| | ||| |||||||||||||||||| ||| |||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 2403835 - 2403906
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||  |||||||    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatatt 2403906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 29834046 - 29833981
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 29833981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 2409957 - 2410028
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||| ||||||||  |||||||    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatatt 2410028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 10911536 - 10911470
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||||||| |||||| ||| ||||||||| |||||||| ||| |||||||||||    
T  10911536 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagtt 10911470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 13011881 - 13011816
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||| |||||||||| |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 13011816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 29833076 - 29833141
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 29833141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 10909292 - 10909226
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaa-gaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||| ||||||||    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagtt 10909226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 8933549 - 8933614
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||| || ||||||| |||||||||||| |||||||| | | |||||||||||    
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagtt 8933614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 734579 - 734619
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaac 336  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaac 734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 3935139 - 3935073
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  3935139 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 3935073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 3932899 - 3932834
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 3932834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 8731174 - 8731241
Alignment:
Q  295 tttggctcagggacaaaaggaatggtaga-gaaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||||| ||||||  |||||||||||| |||||||| ||| |||||||||||    
T  8731174 tttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagtt 8731241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 8733495 - 8733566
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||  | |||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatatt 8733566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 36464211 - 36464278
Alignment:
Q  295 tttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||||| ||||||| |||| ||||||| |||||||| ||| |||||||||||    
T  36464211 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagtt 36464278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 8414489 - 8414555
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||||||| ||||||| ||||||| |||| |||||||| ||| |||||||||||    
T  8414489 ttggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagtt 8414555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 16496953 - 16497018
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 16497018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 18395497 - 18395432
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||| |||||||||||||| |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 18395432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 42678571 - 42678636
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| ||||| |||||| |||||||| ||| |||||||||||    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagtt 42678636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 19789272 - 19789201
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||| |||  |||||||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatatt 19789201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 16535135 - 16535200
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||| ||||||||||| | |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 16535200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 16630527 - 16630462
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||| ||||||||||| | |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 16630462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 19786964 - 19786895
Alignment:
Q  299 gctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||| |||  |||||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatatt 19786895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 19093846 - 19093912
Alignment:
Q  299 gctcagggacaaaaggaatggtagagaaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||| ||||||||  |||||||||| | ||||||||||||||| ||| |||| ||||||||||||    
T  19093846 gctcagggtcaaaaggagaggtagagaaa-atagaaactctctaatattctcaaag-aaagtttatatt 19093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 4533318 - 4533252
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  4533318 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 4533252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 4531020 - 4530955
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 4530955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 5164151 - 5164216
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 5164216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 42275556 - 42275621
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 42275621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 42277782 - 42277847
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||||||||    
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagtt 42277847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 8995076 - 8995135
Alignment:
Q  303 agggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtt 8995135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  297 tggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaa 358  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 15730093 - 15730034
Alignment:
Q  303 agggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||| |||||||||| |||||||||||||||||| ||| ||| |||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagtt 15730034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 31487069 - 31486998
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||| |||  |||||||    
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatatt 31486998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 31489355 - 31489282
Alignment:
Q  295 tttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    ||||||| |||||||||||||| ||||||| |||||||||||| |||||||| ||| |||| |||  |||||||    
T  31489355 tttggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatatt 31489282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 23860188 - 23860126
Alignment:
Q  296 ttggctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaa 357  Q
    |||||||||||||||||||||  | | ||||| |||||||||||||||||| ||| |||||||    
T  23860188 ttggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaa 23860126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  305 ggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaa 357  Q
    |||||||||| | |||||||||| |||||||||||||||||| ||| |||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 3707 - 3777
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||||| ||| |||| ||||||||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaag-aaagtttatatt 3777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 24519151 - 24519218
Alignment:
Q  295 tttggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||  ||||||||||    
T  24519151 tttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagtt 24519218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 4877176 - 4877111
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| || ||||||||    
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagtt 4877111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 4879504 - 4879439
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| || ||||||||    
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagtt 4879439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 36379465 - 36379536
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||| |||  |||||||    
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatatt 36379536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 21268120 - 21268191
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtttatatt 367  Q
    ||||||||||||||||| || ||||||| |||||||||||| |||||||| ||| |||| |||  |||||||    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatatt 21268191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 1801 - 1736
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||||  || |||||||||||    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagtt 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 29514 - 29453
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaa 357  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||  ||| |||||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaa 357  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||  ||| |||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 88531 - 88466
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaagaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||||||| ||| |||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagtt 88466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 20642359 - 20642300
Alignment:
Q  299 gctcagggacaaaaggaatggtagagaaa-tagagaaactctctaataatcttaaagaaa 357  Q
    |||||||||||||| ||| |||||||||| |||||||| ||||||||| ||| |||||||    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 140 - 74
Alignment:
Q  297 tggctcagggacaaaaggaatggtagag-aaatagagaaactctctaataatcttaaa-gaaaagtt 361  Q
    |||||||||||||||||||| ||||||| |||||||||||| || ||||| ||| ||| ||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagtt 74  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University