View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_high_13 (Length: 323)
Name: NF7150_high_13
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 13715300 - 13715604
Alignment:
| Q |
10 |
agatggacatcataaataagcttgtgaaaaaggctttgcatggaattgttctcattggaaaagcgttgtttgttttgttcaacccaaataatccaaatag |
109 |
Q |
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| T |
13715300 |
agatgaacttcataaataagcttgtgaaaaaggctttgcatggaattgttctcattggaaaagcgttgtctgttttgttcaacccaaataat-------- |
13715391 |
T |
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| Q |
110 |
tatgaagcttggcagaaagcatgatttgtttcactggagggctccaaacattctacgagcaatgcagcggaatatcccaagatgataggtcgagaggttg |
209 |
Q |
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| T |
13715392 |
-atgaagcttggcagaaagcatgatttgtttcactggagggctccaaacattctacgagcaatgtagcggaatatcccaagatgataggtcgagaggttg |
13715490 |
T |
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| Q |
210 |
atttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatgtgctcagctgtcatatagcagaagcaacaagcagagacc |
309 |
Q |
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| T |
13715491 |
atttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatgtgctcagctgtcatatagcagaagcaacaaacagagacc |
13715590 |
T |
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| Q |
310 |
aaaatacaccctct |
323 |
Q |
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| T |
13715591 |
aaaatacaccctct |
13715604 |
T |
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