View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7150_high_18 (Length: 250)

Name: NF7150_high_18
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7150_high_18
NF7150_high_18
[»] chr7 (1 HSPs)
chr7 (17-250)||(32061122-32061355)
[»] chr8 (1 HSPs)
chr8 (69-250)||(39530618-39530799)
[»] chr3 (4 HSPs)
chr3 (72-184)||(3236931-3237043)
chr3 (68-214)||(34933491-34933637)
chr3 (68-244)||(14505517-14505693)
chr3 (69-179)||(8969993-8970103)
[»] chr1 (1 HSPs)
chr1 (69-166)||(4166664-4166761)
[»] chr2 (1 HSPs)
chr2 (96-226)||(21086558-21086688)
[»] chr4 (1 HSPs)
chr4 (135-228)||(37589980-37590073)
[»] chr5 (2 HSPs)
chr5 (96-184)||(19233945-19234033)
chr5 (222-250)||(34672154-34672182)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 32061355 - 32061122
Alignment:
Q  17 tataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32061355 tataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaagtgtttttct 32061256  T
Q  117 aaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcg 216  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061255 aaagcgagaaaggagattatgattaaatcagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcg 32061156  T
Q  217 aggagatgataaatggcttttggtgggggaatgg 250  Q
    ||||||||||||||||||||||||||||||||||    
T  32061155 aggagatgataaatggcttttggtgggggaatgg 32061122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 39530618 - 39530799
Alignment:
Q  69 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat 168  Q
    |||||||| ||||| || || ||||  ||||||||||||||| ||||||||||| || | ||  ||||||| |||| ||| ||| |||| ||  | || |    
T  39530618 gatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagcgggacgagatgttatgatcaaatcagttcttcagtctatctcgtcgt 39530717  T
Q  169 atgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggggaatgg 250  Q
    |||| ||||| || ||||  ||||| ||||| ||||| || ||||||||  ||||||| |||| ||||||||||||||||||    
T  39530718 atgttatgagcatcttcaggttaccgaatactttacttgaggaaatcgaaaagatgatgaatgccttttggtgggggaatgg 39530799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 3236931 - 3237043
Alignment:
Q  72 agagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatg 171  Q
    ||||| |||||||  || |||| ||||||||| ||||||||||||| | |  |||||||| |||||||||| |  || ||| |||||||||| |||||||    
T  3236931 agagtgtggcaaagaattaatagctggagtagcaagtgtttgtctagatctggaagggaggttatgattaagtctgtccttcagtcaattccctcatatg 3237030  T
Q  172 tgatgagtatttt 184  Q
    ||||||| |||||    
T  3237031 tgatgagcatttt 3237043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 34933491 - 34933637
Alignment:
Q  68 ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca 167  Q
    ||||||||| |||||||  |||| || |||||| ||||| ||||||||||||||  | |||||| ||||||| ||||  || ||| |  | ||||||||     
T  34933491 ggatagagtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatcaaatctgttcttcaagctattccatct 34933590  T
Q  168 tatgtgatgagtattttcaaattacctaatacattactagatgaaat 214  Q
    ||||| |||||||| || |  ||||| || ||||||||||| |||||    
T  34933591 tatgtcatgagtatctttaggttaccaaacacattactagaggaaat 34933637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 14505693 - 14505517
Alignment:
Q  68 ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca 167  Q
    |||||| ||||||||||| || | ||| ||||| ||||| |||||||| |||||  | || ||| ||||||| ||||| || ||| |  | ||||||||     
T  14505693 ggatagggtatggcaaaaaataagtatttggagcagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattccatct 14505594  T
Q  168 tatgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggg 244  Q
    ||||| |||||||| ||||   |||| |||||  | || |||||||| ||| ||||||| ||||  |||||||||||    
T  14505593 tatgttatgagtatcttcaggctacccaatactctcctggatgaaatagagaagatgatgaatgctttttggtgggg 14505517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 8970103 - 8969993
Alignment:
Q  69 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat 168  Q
    |||||||| ||||| ||||| | || |||||| ||||| ||||||||||||||  |||||||| | ||||| ||||  || ||| | || |||||||| |    
T  8970103 gatagagtgtggcagaagattagtagctggagcagtaaatgtttgtctaaagcaggaagggaggtcatgatcaaatctgttcttcaatctattccatcct 8970004  T
Q  169 atgtgatgagt 179  Q
    |||| ||||||    
T  8970003 atgttatgagt 8969993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 4166664 - 4166761
Alignment:
Q  69 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatc 166  Q
    |||||||||||||| |||||||||| ||||||||| || || |||||||||||  |||||||| | ||||| |||| ||| ||| | || ||||||||    
T  4166664 gatagagtatggcagaagatcaatagctggagtagcaaatgcttgtctaaagcaggaagggaggtcatgatcaaatcagttcttcaatctattccatc 4166761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 21086688 - 21086558
Alignment:
Q  96 tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattaccta 195  Q
    ||||| ||||| ||||||||||||||  |||||||  | ||||| ||||  || ||| | || |||||||| ||||| |||||||| |||| |||||| |    
T  21086688 tggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattccatcctatgttatgagtatcttcagattaccaa 21086589  T
Q  196 atacattactagatgaaatcgaggagatgat 226  Q
    | || ||  |||||||||| ||| |||||||    
T  21086588 acactttgttagatgaaattgagaagatgat 21086558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 37589980 - 37590073
Alignment:
Q  135 atgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataa 228  Q
    ||||||||||| || |||  |||||| || |||||||||||||||||||||||  | || ||| | ||| ||||||| || ||| |||||||||    
T  37589980 atgattaaatttgttcttctgtcaatcccctcatatgtgatgagtattttcaagctgccaaattctttattagatgagattgagaagatgataa 37590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 19233945 - 19234033
Alignment:
Q  96 tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtatttt 184  Q
    ||||||||||||||||| ||||||||  |  | ||| ||||||||||||  || ||  |||| |||||||| ||||| |||||||||||    
T  19233945 tggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatccgtcctacagtctattccatcgtatgttatgagtatttt 19234033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 250
Target Start/End: Original strand, 34672154 - 34672182
Alignment:
Q  222 atgataaatggcttttggtgggggaatgg 250  Q
    |||||||||||||||||||||||||||||    
T  34672154 atgataaatggcttttggtgggggaatgg 34672182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University