View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_high_5 (Length: 504)
Name: NF7150_high_5
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 15798410 - 15797925
Alignment:
| Q |
1 |
tcagttaacatattaccgccatccttggcatgtatcgaccatgacaattaacaccacgtctggctcgcgcacgcaatactttctcaagcttgacatcgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15798410 |
tcagttaacatattaccgccatccttggcatgtatcgaccatgacaattgacaccacgtctggctcgagcacgcaatactttctcaagcttgacatcgaa |
15798311 |
T |
|
| Q |
101 |
tccatcataaagtccccactgctcctcaatttcttgttttgtactagtaataacaagttctgcagcatcaagagaaagttcttctgcttctatcctcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15798310 |
tccatcataaagtccccactgctcctcaatttcttgttttgtactagtaataacaagttctgcagcatcaagggaaagttcttctgcttctatcctcctc |
15798211 |
T |
|
| Q |
201 |
atcatcttatacattgaattgatatcttccttcgattggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccggtcagcacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15798210 |
atcatcttatacattgaattgatatcttccttcgactggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccggtcagcacca |
15798111 |
T |
|
| Q |
301 |
tcggtacatttaaagcgcccgaaagaatagcagcactatctccggcatcagcgtaatgtccgtgaatcacatacggccaaacaggttgacctccaccgac |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15798110 |
tcggtacatttaaagcacccgaaagaatagcagcactatctccggcatcagcgtaatgtccgtgaatcacatacggccaaacaggttgacctccaccgac |
15798011 |
T |
|
| Q |
401 |
ttgttcacccaatgcttttgacatattgagaatatgtgttaatgctccatcaacaaactcttgaacatatggccaaagaagctctt |
486 |
Q |
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| T |
15798010 |
ttgttcacccaatgcttttgacatattgagaatatgtgttaatgctccatccacaaactcttgaacatatggccaaagaagctctt |
15797925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 465
Target Start/End: Complemental strand, 39811027 - 39810575
Alignment:
| Q |
13 |
ttaccgccatccttggcatgtatcgaccatgacaattaacaccacgtctggctcgcgcacgcaatactttctcaagcttgacatcgaatccatcataaag |
112 |
Q |
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|||||||||| || |||||||| |||||||||||||| |||||||| || | || |||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
39811027 |
ttaccgccattctgggcatgtaacgaccatgacaattgacaccacgcctatcacgggcacgcaaaactttttcaagcttgacatcaaacccatcataaag |
39810928 |
T |
|
| Q |
113 |
tccccactgctcctcaatttcttgttttgtactagtaataacaagttctgcagcatcaagagaaagttcttctgcttctatcctcctcatcatcttatac |
212 |
Q |
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|||||| || || |||||||||||| |||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
39810927 |
tccccattgttcatcaatttcttgtcttgtactagtgatgacaagttctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatac |
39810828 |
T |
|
| Q |
213 |
attgaattgatatcttccttcgattggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccggtcagcaccatcggtacattta |
312 |
Q |
| |
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||||||||||||| ||| |||||||| |||||||||||||||||||| || |||||||||||||| |||||||| || || ||||| || ||||| | |
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| T |
39810827 |
gttgaattgatatcctcccaagattggcgcccttgcttaagaagttgttctagtttgtttcttccaagtgaatgaccagtgagaaccattggcacattca |
39810728 |
T |
|
| Q |
313 |
aagcgcccgaaagaatagcagcactatctccggcatcagcgtaatgtccgtgaatcacatacggccaaacaggttgacctccaccgacttgttcacccaa |
412 |
Q |
| |
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|||| || ||||||| ||||||||| || || |||||||| || ||||| ||||||||||| ||||| |||||||| || || || |||||||||||||| |
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| T |
39810727 |
aagcacctgaaagaagagcagcactgtcaccagcatcagcatagtgtccatgaatcacataaggccacacaggttgtccaccgccaacttgttcacccaa |
39810628 |
T |
|
| Q |
413 |
tgcttttgacatattgagaatatgtgttaatgctccatcaacaaactcttgaa |
465 |
Q |
| |
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| |||||||||| |||||||| || | ||| |||||||| ||||| ||||||| |
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| T |
39810627 |
tacttttgacatgttgagaatgtgagctaaggctccatctacaaattcttgaa |
39810575 |
T |
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