View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_high_6 (Length: 476)
Name: NF7150_high_6
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 34502073 - 34501631
Alignment:
| Q |
19 |
caaaatactttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgaggtggacgcctgggaagaatggcttaaacaaacg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34502073 |
caaaatactttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgaggtggacgcctgggaagaatggcttaaacaaacg |
34501974 |
T |
|
| Q |
119 |
ctctttatgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||| |
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| T |
34501973 |
ctctttatgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacagtctacatccttcaa |
34501874 |
T |
|
| Q |
219 |
tatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacat |
318 |
Q |
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|||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34501873 |
tatatgatatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacat |
34501774 |
T |
|
| Q |
319 |
ttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagtctgctgta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34501773 |
ttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagtctgctgta |
34501674 |
T |
|
| Q |
419 |
ccatacgctcattgctggatattgcaggctacagaaatttgat |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34501673 |
ccatacgctcattgctggatattgcaggctacagaaatttgat |
34501631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 462
Target Start/End: Original strand, 44460618 - 44461065
Alignment:
| Q |
29 |
tgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg---tggacgcctgggaagaatggcttaaacaaacgctcttta |
125 |
Q |
| |
|
||||||| ||| ||||| |||||| ||||||| ||||||||||||||||||| |||| |||||| | ||||| ||| | |||||| | |||||||| |
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| T |
44460618 |
tgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctcttta |
44460717 |
T |
|
| Q |
126 |
tgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgt |
225 |
Q |
| |
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|||||| | |||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| |
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| T |
44460718 |
cacatgttttcggagccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatga |
44460817 |
T |
|
| Q |
226 |
tatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgat |
325 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || |
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|
| T |
44460818 |
tatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaat |
44460917 |
T |
|
| Q |
326 |
cctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgc |
414 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||| || ||||||| | |||||||||||| ||| ||||||| ||||||||||| | ||| |
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| T |
44460918 |
cctcttatgtttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgc |
44461017 |
T |
|
| Q |
415 |
tgtaccatacgctcattgctggatattgcaggctacagaaatttgatg |
462 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
44461018 |
tgtaccatacactcattgttggatattgcaagctagagaaatttgatg |
44461065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 462
Target Start/End: Original strand, 44468151 - 44468598
Alignment:
| Q |
29 |
tgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg---tggacgcctgggaagaatggcttaaacaaacgctcttta |
125 |
Q |
| |
|
||||||| ||| ||||| |||||| ||||||| ||||||||||||||||||| |||| |||||| | ||||| ||| | |||||| | |||||||| |
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|
| T |
44468151 |
tgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctcttta |
44468250 |
T |
|
| Q |
126 |
tgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgt |
225 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| |
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|
| T |
44468251 |
cacatgttttcggagccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatga |
44468350 |
T |
|
| Q |
226 |
tatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgat |
325 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || |
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|
| T |
44468351 |
tatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaat |
44468450 |
T |
|
| Q |
326 |
cctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgc |
414 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||| || ||||||| | |||||||||||| ||| ||||||| ||||||||||| | ||| |
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|
| T |
44468451 |
cctcttatgtttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgc |
44468550 |
T |
|
| Q |
415 |
tgtaccatacgctcattgctggatattgcaggctacagaaatttgatg |
462 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||| |||||||||||| |
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|
| T |
44468551 |
tgtaccatacactcattgttggatattgcaagctagagaaatttgatg |
44468598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 215 - 462
Target Start/End: Original strand, 46359606 - 46359864
Alignment:
| Q |
215 |
tcaatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtat |
314 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | | |
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|
| T |
46359606 |
tcaatatacgatatcagtataattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggttttt |
46359705 |
T |
|
| Q |
315 |
acatttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag----- |
409 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| || || ||||| | |||||||||||||| || ||||||| ||||||||||| |
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|
| T |
46359706 |
acatttgtaatcctcttatgtttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaat |
46359805 |
T |
|
| Q |
410 |
------tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatg |
462 |
Q |
| |
|
| ||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |
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|
| T |
46359806 |
cattactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatg |
46359864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 46359478 - 46359545
Alignment:
| Q |
19 |
caaaatactttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg |
86 |
Q |
| |
|
|||||| || ||||||| ||| ||||| |||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
46359478 |
caaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgagg |
46359545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 306
Target Start/End: Complemental strand, 40180166 - 40179993
Alignment:
| Q |
139 |
agccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatc------aacgtccatcaatatatgttatcaat |
232 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||||||| |||||||| ||||||||||||||||| || | ||||| |||| | | ||| ||||| |
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|
| T |
40180166 |
agccttgtgtcagtttaaagattttgatgcagccaagcagttgatctttaaaatgattgcagacggtccgctacagcgtccttcaaaagaagttttcaat |
40180067 |
T |
|
| Q |
233 |
ataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtat |
306 |
Q |
| |
|
| ||||||| |||||||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
40180066 |
gtgattattaagacctatgttgatgctagggaaatcggacaagctttggagatggtgatgctattggaaagtat |
40179993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 41583985 - 41584037
Alignment:
| Q |
410 |
tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatg |
462 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41583985 |
tctgctgtaccatacgctcattgatggatattgcaggctacagaaatttgatg |
41584037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 38604576 - 38604490
Alignment:
| Q |
231 |
atataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtataca |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||| ||| |||||| |
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|
| T |
38604576 |
atataattattagtgcctgtgttaaagctagggaaaccggacgggctttggagatggtgttgctattggaaagtataggtttataca |
38604490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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