View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_10 (Length: 402)
Name: NF7150_low_10
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 38126720 - 38126351
Alignment:
| Q |
5 |
agcagaacctgtgtatatcattcaaagaaaaaagcagaacctatatataaccaaataattaaacaatcagtgtcaaatgcattccaactaataaggcatg |
104 |
Q |
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| T |
38126720 |
agcagaacctatatatatcattcaaagaaaaaagcagaacctatatataaccaaataattaaacaatcagtgtcaaatgcattccaactaataaggcatg |
38126621 |
T |
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| Q |
105 |
catatatttaataaatatttctcaaaaatatggagaaataaaacttaaggaatgtgcattaaaataagtgaactaatcctacatgttataggtttgatct |
204 |
Q |
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| T |
38126620 |
catatatttaataaatatttctcaaaaatatggagaaataaga--------------attaaaataagtgaactaatcctacatgttataggtttgatct |
38126535 |
T |
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| Q |
205 |
gaggaccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtctaaacttctacttctagtttatatgaagatat |
304 |
Q |
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| T |
38126534 |
aaggaccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtctaaacttctacttctagtttatatgaagatat |
38126435 |
T |
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| Q |
305 |
tgtcatatatgtcagttttcctgatctatatctacatagagacctatgaagtaatccctagtaataaatcctgcagttgatatt |
388 |
Q |
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| T |
38126434 |
tgtcatatatgtcagttttcctgatctatatctacatagagacctatgaagtaatccctagtaataaatcctgcagttgatatt |
38126351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 39708616 - 39708558
Alignment:
| Q |
112 |
ttaataaatatttctcaaaaa-tatggagaaataaaacttaaggaatgtgcattaaaat |
169 |
Q |
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| T |
39708616 |
ttaataaacatttctgaaaaaatatggagaaataagacttaaggaatgtgcattaaaat |
39708558 |
T |
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