View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_11 (Length: 389)
Name: NF7150_low_11
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 21372697 - 21373071
Alignment:
| Q |
15 |
aattatatcaggtttaacaggtgcaggtggaaactttggttcaggattaacacagttgatannnnnnncaagctcaaaattttcaacagcttcaggtctt |
114 |
Q |
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| T |
21372697 |
aattatatcaggtttaacaggtgcaggtggaaactttggttctggattaacacagttgatatttttttcaagctcaaaattttcaacagcttcaggtctt |
21372796 |
T |
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| Q |
115 |
tcatggatgggtgcaatgattgttggttgtacacttccggttgcttttgttcattttccacagtggggtagcatgttccttccaccttcaaaagagatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21372797 |
tcatggatgggtgcaatgattgttggttgtacacttccagttgcttttgttcattttccacagtggggtagcatgttccttccagcttcaaaagagatca |
21372896 |
T |
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| Q |
215 |
atgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372897 |
atgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagag |
21372996 |
T |
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| Q |
315 |
aggtaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgcccc |
389 |
Q |
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| T |
21372997 |
aggaaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgcccc |
21373071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 21384860 - 21384493
Alignment:
| Q |
15 |
aattatatcaggtttaacaggtgcaggtggaaactttggttcaggattaacacagttgatannnnnnncaagctcaaaattttcaacagcttcaggtctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21384860 |
aattatatcaggtttaacaggtgcaggtggaaactttggttctggattaacacagttgatatttttttcaagctcaaaattttcaacagcttcaggtctt |
21384761 |
T |
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| Q |
115 |
tcatggatgggtgcaatgattgttggttgtacacttccggttgcttttgttcattttccacagtggggtagcatgttccttccaccttcaaaagagatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21384760 |
tcatggatgggtgcaatgattgttggttgtacacttccagttgcttttgttcattttccacagtggggtagcatgttccttccagcttcaaaagagatca |
21384661 |
T |
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| Q |
215 |
atgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21384660 |
atgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagag |
21384561 |
T |
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| Q |
315 |
aggtaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttat |
382 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21384560 |
aggaaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttat |
21384493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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