View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_13 (Length: 335)
Name: NF7150_low_13
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 38126684 - 38127016
Alignment:
| Q |
1 |
ctgcttttttctttgaatgatatatataggttctgcttgtgttgtagttttggttatataactggagtgtcatatttggtggagtgatttcttgtttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38126684 |
ctgcttttttctttgaatgatatatataggttctgcttgtgtcgtagttttggttatataactggagtgtcatatttggtggagtgatttcttgtgtata |
38126783 |
T |
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| Q |
101 |
gtacaagcattggtctaatctttgcgtatcttgtgtttagactatattttacttctagatttttcattttaaaaagaagtttgtgctatatatcaaactt |
200 |
Q |
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| T |
38126784 |
gtacaagcattggtctaatctttgcgtatcttgcgtctagactatattttacttctaga-ttttcattttaaaaaggagtttgtgctatatatcaaactt |
38126882 |
T |
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| Q |
201 |
aaaccttctaccaggaacacctaaatgagagatgataatgaatctcttcaagacttaactagaggttttgagttcgaatcaaactctcggaatgtaacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126883 |
aaaccttctaccaggaacacctaaatgagagatgataatgaatctcttc-tggcttaactagaggttttgagttcgaatcaaactctcggaatgtaacaa |
38126981 |
T |
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| Q |
301 |
tgttaaatcttttgaggaagagttttgtcattcat |
335 |
Q |
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| T |
38126982 |
tgttaaatcttttgaggaagaattttgtcattcat |
38127016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 38127110 - 38127215
Alignment:
| Q |
229 |
gagatgataatgaatctcttcaagacttaactagaggttttgagttcgaatcaaactctcggaatgtaa----caatgttaaatcttttgaggaagagtt |
324 |
Q |
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| T |
38127110 |
gagatgataatgaatctctttcag-cttagctagaggttttgagttcgaatccagctctcggaacgcaataattaatgttaaatctcttgatgaagaatt |
38127208 |
T |
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| Q |
325 |
ttgtcat |
331 |
Q |
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||||||| |
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| T |
38127209 |
ttgtcat |
38127215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 15064322 - 15064366
Alignment:
| Q |
291 |
aatgtaacaatgttaaatcttttgaggaagagttttgtcattcat |
335 |
Q |
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| T |
15064322 |
aatgtatcaatgttaaatcttttgaagaagagttttatcattcat |
15064366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 8168951 - 8168877
Alignment:
| Q |
255 |
ttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagttttgtca |
330 |
Q |
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| T |
8168951 |
ttaactagaggttt-gagttcgaatctaattatgagaatgcagcaatgttaaatcttttgaaggagagttttgtca |
8168877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 37438311 - 37438270
Alignment:
| Q |
269 |
tgagttcgaatcaaactctcggaatgtaacaatgttaaatct |
310 |
Q |
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| T |
37438311 |
tgagtttgaatccaactctgggaatgtaacaatgttaaatct |
37438270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 7163920 - 7163952
Alignment:
| Q |
298 |
caatgttaaatcttttgaggaagagttttgtca |
330 |
Q |
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| T |
7163920 |
caatgttaaatctattgaggaagagttttgtca |
7163952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 43346398 - 43346361
Alignment:
| Q |
290 |
gaatgtaacaatgttaaatcttttgaggaagagttttg |
327 |
Q |
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||||| ||||||||||||||| |||||||||||||||| |
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| T |
43346398 |
gaatgcaacaatgttaaatctcttgaggaagagttttg |
43346361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 15052033 - 15052065
Alignment:
| Q |
303 |
ttaaatcttttgaggaagagttttgtcattcat |
335 |
Q |
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| T |
15052033 |
ttaaatcttttgagaaagagttttgtcattcat |
15052065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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