View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7150_low_16 (Length: 320)
Name: NF7150_low_16
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 114 - 302
Target Start/End: Complemental strand, 27637915 - 27637727
Alignment:
| Q |
114 |
gggagtttcatcctatctctcatttaggttctttgtataagctggtggataaagtgctggcctcaaggttggcctctgtgatggataaaatcatctcatc |
213 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637915 |
gggagtttcatccaatctctcttttaggttctttgtataagctggtggataaagtgttggcctcaaggttggcctctgtgatggataaaatcatctcatc |
27637816 |
T |
|
| Q |
214 |
tacccagtatgttttccttaaaggtatgcaattggtggatggagtggtggtggtgcttaatcaggttgtggatctggccaaaaaatcta |
302 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637815 |
tacccggtatgttttccttaaaggtatgcaattgatggatggagtggtggtggtgcttaatcaggttgtggatctggccaaaaaatcta |
27637727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 16703564 - 16703528
Alignment:
| Q |
226 |
tttccttaaaggtatgcaattggtggatggagtggtg |
262 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
16703564 |
tttccttaaaggtaggcaaatggtggatggagtggtg |
16703528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 12076920 - 12077082
Alignment:
| Q |
87 |
ctaaagttgattcccctcaatctcttagggagtttcatcctatctctcatttaggttctttgtataagctggtggataaagtgctggcctcaaggttggc |
186 |
Q |
| |
|
|||||||| || |||||||||||||| | ||||||| ||||||||||| | ||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
12076920 |
ctaaagtttatacccctcaatctcttggtgagtttcgtcctatctctcttctaggttccctgtataagctgga--------tgct----tcaaggttggc |
12077007 |
T |
|
| Q |
187 |
ctctgtgatggataaaatcatctcatctacccagtatgttttccttaaaggtatgcaattggtggatggagtggt |
261 |
Q |
| |
|
||| ||||||||||||| |||||| |||| ||||| | ||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
12077008 |
ctcggtgatggataaaaccatctcgtctaaccagtcagctttacttaaaggtaggcaattggtggttggagtggt |
12077082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 102 - 302
Target Start/End: Original strand, 30862235 - 30862432
Alignment:
| Q |
102 |
ctcaatctcttagggagtttcatcctatctctcatttaggttctttgtataagctggtggataaagtgctggcctcaaggttggcctctgtgatggataa |
201 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| | ||||||| |||||||| || | | |||||| | || |||||||| | || ||||||||||| |
|
|
| T |
30862235 |
ctcaatctctttgggagtttcatcctatatctcttataggttccctgtataagttgattgttaaagttttagcttcaaggttcacttcagtgatggataa |
30862334 |
T |
|
| Q |
202 |
aatcatctcatctacccagtatgttttccttaaaggtatgcaattggtggatggagtggtggtggtgcttaatcaggttgtggatctggccaaaaaatct |
301 |
Q |
| |
|
|||||| || | | ||||| | |||||||||||| | ||||||||||| |||||||||||| | ||| ||||||||||||| || ||||||||| |
|
|
| T |
30862335 |
aatcatttcgccaaaccagtcagctttccttaaagggagataattggtggatagagtggtggtgg---tcaatgaggttgtggatctagcaaaaaaatct |
30862431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 5217105 - 5217158
Alignment:
| Q |
90 |
aagttgattcccctcaatctcttagggagtttcatcctatctctcatttaggtt |
143 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||||||||| | |||||| |
|
|
| T |
5217105 |
aagttgactcccctcaatctcttggggagttccatcctatctctcttctaggtt |
5217158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 2387230 - 2387157
Alignment:
| Q |
231 |
ttaaaggtatgcaattggtggatggagtggtggtggtgcttaatcaggttgtggatctggccaaaaaatctacacag |
307 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| || | ||| ||||||||||||| ||||||||| ||| |||| |
|
|
| T |
2387230 |
ttaaaggtaggcaattggtggatggagtagtggcgg---taaatgaggttgtggatctagccaaaaaaactaaacag |
2387157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 5217241 - 5217310
Alignment:
| Q |
226 |
tttccttaaaggtatgcaattggtggatggagtggtggtggtgcttaatcaggttgtggatctggccaaaaaa |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || | ||| ||||||||||| | ||||||||| |
|
|
| T |
5217241 |
tttccttaaaggtgggcaattggtggatggagtggtggcgg---tcaatgaggttgtggatatagccaaaaaa |
5217310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 25058113 - 25058001
Alignment:
| Q |
98 |
tcccctcaatctcttagggagtttcatcctatctctcatttaggttctttgtataagctggtggataaagtgctggcctcaaggttggcctctgtgatgg |
197 |
Q |
| |
|
|||| |||| ||||| | ||||||| ||||||||||| | ||| ||| | ||||||||||| | ||||||| ||| | ||||||||||| |||| || |
|
|
| T |
25058113 |
tcccgtcaacctctttgagagtttcgtcctatctctcttctagattccctatataagctggtagttaaagtgttggttttaaggttggccttagtgaagg |
25058014 |
T |
|
| Q |
198 |
ataaaatcatctc |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25058013 |
ataaaatcatctc |
25058001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University